Browse Element(s) Details


OsAffx.14952.1.S1_at

Description tigr:9633.m03140
TID=OsAffx.14952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g339709/11hypothetical protein
LOC_Os12g097391/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33930OsAffx.14951.1.S1_at11/115+19948800..19949099hypothetical protein
LOC_Os05g33940Os.11867.2.S1_at11/115+19954831..19956502hsr203J, putative, expressed
LOC_Os05g33950OsAffx.27147.1.S1_at11/115+19959348..19960795hypothetical protein
LOC_Os05g33960Os.38339.1.S1_at11/115+19962044..19967604POT family protein, expressed
LOC_Os05g33970OsAffx.14952.1.S1_at9/115+19972195..19973981hypothetical protein
LOC_Os05g33980NANA5+19977879..19983840retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990Os.28943.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14952.1.S1_at--808--7691Chr05:19972861..19972885 (25 bp)
GGGTCCATGCTCTCCAGATCATTAA
LOC_Os05g33970
OsAffx.14952.1.S1_at--352--3531NONE
CATGCTCTCCAGATCATTAAGGGAT
NONE
OsAffx.14952.1.S1_at--63--9231Chr05:19972873..19973039 (25 bp)
TCCAGATCATTAAGGGATACGAGTT
LOC_Os05g33970
OsAffx.14952.1.S1_at--711--9933Chr06:5181434..5181455 (22 bp)
TACGAGTTGGTTGATCAGATCCACT
NONE
OsAffx.14952.1.S1_at--584--7911Chr05:19973040..19973061 (22 bp)
GGTTGATCAGATCCACTGCGAGATT
LOC_Os05g33970
OsAffx.14952.1.S1_at--779--3431NONE
CAGATCCACTGCGAGATTGTTTATC
NONE
OsAffx.14952.1.S1_at--181--4311Chr05:19973420..19973441 (22 bp)
GCGAGATTGTTTATCGGTTTCCGAA
LOC_Os05g33970
OsAffx.14952.1.S1_at--399--3951Chr05:19973431..19973455 (25 bp)
CGGTTTCCGAATAAAAAGATTGCAG
LOC_Os05g33970
OsAffx.14952.1.S1_at--597--6591Chr05:19973448..19973472 (25 bp)
GATTGCAGATAAGTTCCATTGGTCC
LOC_Os05g33970
OsAffx.14952.1.S1_at--1126--6451Chr05:19973455..19973479 (25 bp)
GATAAGTTCCATTGGTCCTTCAAAG
LOC_Os05g33970
OsAffx.14952.1.S1_at--247--6691Chr05:19973460..19973484 (25 bp)
GTTCCATTGGTCCTTCAAAGAAAAG
LOC_Os05g33970
Target Sequence 
GGGTCCATGCTCTCCAGATCATTAAGGGATACGAGTTGGTTGATCAGATCCACTGCGAGATTGTTTATCGGTTTCCGAAT
AAAAAGATTGCAGATAAGTTCCATTGGTCCTTCAAAGAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis