Browse Element(s) Details


OsAffx.14964.1.S1_at

Description tigr:9633.m03230
TID=OsAffx.14964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3481011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34760Os.14243.1.S1_at11/115+20537737..20545104expressed protein
LOC_Os05g34760OsAffx.22564.2.S1_at2/115+20537737..20545104expressed protein
LOC_Os05g34770OsAffx.27166.1.S1_at11/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.10312.1.S1_at9/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.57469.1.S1_x_at8/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34780Os.27987.1.S1_at10/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780Os.38751.1.A1_at8/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.8469.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.1197.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34790Os.51415.1.S1_at11/115+20563271..20565837GYF domain containing protein, expressed
LOC_Os05g34800Os.51415.2.S1_at11/115+20565099..20567342expressed protein
LOC_Os05g34800OsAffx.24510.1.S1_x_at1/115+20565099..20567342expressed protein
LOC_Os05g34810OsAffx.14964.1.S1_at11/115+20568066..20568638hypothetical protein
LOC_Os05g34820Os.11597.1.S1_at11/115+20579841..20585418expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14964.1.S1_at--377--6171Chr05:20568231..20568255 (25 bp)
GAGGAGCCGAGCGCGTACGAGATGC
LOC_Os05g34810
OsAffx.14964.1.S1_at--915--9351Chr05:20568373..20568397 (25 bp)
TCGACGGCGGGTACCGGCTCACCTA
LOC_Os05g34810
OsAffx.14964.1.S1_at--799--4631Chr05:20568379..20568403 (25 bp)
GCGGGTACCGGCTCACCTACCAGGG
LOC_Os05g34810
OsAffx.14964.1.S1_at--1135--6151Chr05:20568404..20568428 (25 bp)
GAGGATCACCGGCAGGGTGGCCGGC
LOC_Os05g34810
OsAffx.14964.1.S1_at--338--4651Chr05:20568451..20568475 (25 bp)
GCGTCACGGTGAGGGTCTTCATGAT
LOC_Os05g34810
OsAffx.14964.1.S1_at--14--7111Chr05:20568453..20568477 (25 bp)
GTCACGGTGAGGGTCTTCATGATGA
LOC_Os05g34810
OsAffx.14964.1.S1_at--1109--3331Chr05:20568455..20568479 (25 bp)
CACGGTGAGGGTCTTCATGATGAAC
LOC_Os05g34810
OsAffx.14964.1.S1_at--1071--3971Chr05:20568457..20568481 (25 bp)
CGGTGAGGGTCTTCATGATGAACTG
LOC_Os05g34810
OsAffx.14964.1.S1_at--1142--9291Chr05:20568553..20568577 (25 bp)
TCCCGGTGGACGGATTCGAGGAATC
LOC_Os05g34810
OsAffx.14964.1.S1_at--256--5751Chr05:20568561..20568585 (25 bp)
GACGGATTCGAGGAATCGCCGCAGT
LOC_Os05g34810
OsAffx.14964.1.S1_at--304--7931Chr05:20568564..20568588 (25 bp)
GGATTCGAGGAATCGCCGCAGTGCC
LOC_Os05g34810
Target Sequence 
GAGGAGCCGAGCGCGTACGAGATGCTGGAGAGGTTCGGGTTCCCGCGCGGCATCCTGCCGGAGGGGGTGACGGGGTACAC
GCTCCGGCCGTCGGACGGCGAGTTCGCGGTGTACCTCGGGACGGGGGAGTGCGAGTTCGAGGTCGACGGCGGGTACCGGC
TCACCTACCAGGGGAGGATCACCGGCAGGGTGGCCGGCGGCAGCATCACCGGCCTCCGCGGCGTCACGGTGAGGGTCTTC
ATGATGAACTGGGGCATCGACCGCGTCGTCGTGGCCGACGCCGACCACCTCGTGTTCTACGTCGGCCCGCTCTCCCAGGC
GTTCCCGGTGGACGGATTCGAGGAATCGCCGCAGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis