Browse Element(s) Details


OsAffx.14986.1.S1_at

Description tigr:9633.m03406
TID=OsAffx.14986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3695011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36900OsAffx.14985.1.S1_at11/115+21472368..21473351Dof domain, zinc finger family protein
LOC_Os05g36910Os.4894.2.S1_a_at11/115+21474180..21476854NC domain-containing protein, putative, expressed
LOC_Os05g36920Os.4894.1.S1_a_at11/115+21478189..21481136Histone deacetylase family protein, expressed
LOC_Os05g36930Os.27331.1.S1_at11/115+21484176..21488626Histone deacetylase family protein, expressed
LOC_Os05g36940NANA5+21490995..21495302retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36950OsAffx.14986.1.S1_at11/115+21496386..21496662hypothetical protein
LOC_Os05g36960Os.53685.1.S1_at11/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36960Os.49478.1.S1_at1/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36970OsAffx.14987.1.S1_at11/115+21512670..21513839uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g36980OsAffx.14988.1.S1_x_at11/115+21515492..21520139hypothetical protein
LOC_Os05g36980OsAffx.14988.2.S1_x_at6/115+21515492..21520139hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14986.1.S1_at--786--7171Chr05:21496541..21496565 (25 bp)
GTCTGCATGAAGCTCGAGTCATCTT
LOC_Os05g36950
OsAffx.14986.1.S1_at--91--5411Chr05:21496533..21496557 (25 bp)
GAAGCTCGAGTCATCTTGGATTTTA
LOC_Os05g36950
OsAffx.14986.1.S1_at--984--1151Chr05:21496525..21496549 (25 bp)
AGTCATCTTGGATTTTACTCGAAGT
LOC_Os05g36950
OsAffx.14986.1.S1_at--1102--10471Chr05:21496511..21496535 (25 bp)
TTACTCGAAGTAAGACAAGGCAAAT
LOC_Os05g36950
OsAffx.14986.1.S1_at--51--2231Chr05:21496478..21496502 (25 bp)
ACAAGAGCAGGAGAGGTCGCCAGCT
LOC_Os05g36950
OsAffx.14986.1.S1_at--695--971Chr05:21496470..21496494 (25 bp)
AGGAGAGGTCGCCAGCTCCCTTCAA
LOC_Os05g36950
OsAffx.14986.1.S1_at--842--1531Chr05:21496457..21496481 (25 bp)
AGCTCCCTTCAAGCAAGTCCATATT
LOC_Os05g36950
OsAffx.14986.1.S1_at--732--3791Chr05:21496455..21496479 (25 bp)
CTCCCTTCAAGCAAGTCCATATTTG
LOC_Os05g36950
OsAffx.14986.1.S1_at--353--3231Chr05:21496448..21496472 (25 bp)
CAAGCAAGTCCATATTTGGGTAAAA
LOC_Os05g36950
OsAffx.14986.1.S1_at--1137--191Chr05:21496435..21496459 (25 bp)
ATTTGGGTAAAACCCATATGCATAT
LOC_Os05g36950
OsAffx.14986.1.S1_at--1151--631Chr05:21496418..21496442 (25 bp)
ATGCATATGGGAGTAACTTCATTAC
LOC_Os05g36950
Target Sequence 
GTCTGCATGAAGCTCGAGTCATCTTGGATTTTACTCGAAGTAAGACAAGGCAAATGGGAAAAAACAAGAGCAGGAGAGGT
CGCCAGCTCCCTTCAAGCAAGTCCATATTTGGGTAAAACCCATATGCATATGGGAGTAACTTCATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis