Browse Element(s) Details


OsAffx.14987.1.S1_at

Description tigr:9633.m03408
TID=OsAffx.14987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3697011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36930Os.27331.1.S1_at11/115+21484176..21488626Histone deacetylase family protein, expressed
LOC_Os05g36940NANA5+21490995..21495302retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36950OsAffx.14986.1.S1_at11/115+21496386..21496662hypothetical protein
LOC_Os05g36960Os.53685.1.S1_at11/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36960Os.49478.1.S1_at1/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36970OsAffx.14987.1.S1_at11/115+21512670..21513839uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g36980OsAffx.14988.1.S1_x_at11/115+21515492..21520139hypothetical protein
LOC_Os05g36980OsAffx.14988.2.S1_x_at6/115+21515492..21520139hypothetical protein
LOC_Os05g36990Os.10101.1.S1_at11/115+21527207..21528419uncharacterized plant-specific domain TIGR01568 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14987.1.S1_at--88--3391Chr05:21513413..21513437 (25 bp)
CAGCCGCAAGCGATTGAGATCCTTT
LOC_Os05g36970
OsAffx.14987.1.S1_at--827--6031Chr05:21513428..21513452 (25 bp)
GAGATCCTTTACAGGCACGGTTTTT
LOC_Os05g36970
OsAffx.14987.1.S1_at--243--931Chr05:21513440..21513464 (25 bp)
AGGCACGGTTTTTGTCACGGGCATG
LOC_Os05g36970
OsAffx.14987.1.S1_at--464--8051Chr05:21513474..21513498 (25 bp)
GGAGATCATCGGTCCACATGTTAAT
LOC_Os05g36970
OsAffx.14987.1.S1_at--705--10051Chr05:21513648..21513672 (25 bp)
TAGTATGATCTAGCCGTAGCACAAA
LOC_Os05g36970
OsAffx.14987.1.S1_at--528--6871Chr05:21513676..21513700 (25 bp)
GTATTGTACTCTAACTAGCTACTCT
LOC_Os05g36970
OsAffx.14987.1.S1_at--866--3711Chr05:21513690..21513714 (25 bp)
CTAGCTACTCTATATGGTGTGCATG
LOC_Os05g36970
OsAffx.14987.1.S1_at--130--9051Chr05:21513715..21513739 (25 bp)
TGCATGGGAAGCACGACGTCCGTTG
LOC_Os05g36970
OsAffx.14987.1.S1_at--91--6691Chr05:21513736..21513760 (25 bp)
GTTGCCCTGCATGCATGGTTATGTG
LOC_Os05g36970
OsAffx.14987.1.S1_at--935--131Chr05:21513768..21513792 (25 bp)
ATTACAGGATTATCAGCCCCATCGT
LOC_Os05g36970
OsAffx.14987.1.S1_at--1148--1651Chr05:21513782..21513806 (25 bp)
AGCCCCATCGTTCTATGTATGTTTA
LOC_Os05g36970
Target Sequence 
CAGCCGCAAGCGATTGAGATCCTTTACAGGCACGGTTTTTGTCACGGGCATGTATGGGACTGGAGATCATCGGTCCACAT
GTTAATGACCAATGTGATATTTCATTTGTTCCAAAATATTAAAATATTAGCTAGAATATAATGTAATACTTTCTATTACT
AAAAAGGTTTTTCCTAAATTCATTACAATAGAAAGTATCTAATCGTATACTAGATAGTAACATTTAGAACGAAAATAGTA
TGATCTAGCCGTAGCACAAATACGTATTGTACTCTAACTAGCTACTCTATATGGTGTGCATGTGCATGGGAAGCACGACG
TCCGTTGCCCTGCATGCATGGTTATGTGATATACTATTACAGGATTATCAGCCCCATCGTTCTATGTATGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis