Browse Element(s) Details


OsAffx.15056.1.S1_s_at

Description tigr:9633.m03864
TID=OsAffx.15056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=contains similarity to eukaryotic protein kinase domains (Pfam: PF00069, score
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4127011/11Calcium-dependent protein kinase, isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os05g41240Os.13978.1.S1_a_at11/115+24070525..24074848MYB transcription factor, putative, expressed
LOC_Os05g41250OsAffx.27273.1.S1_x_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41250OsAffx.27273.1.S1_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41259NANA5+24090501..24091191NA
LOC_Os05g41270OsAffx.15056.1.S1_s_at11/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41270OsAffx.15056.1.S1_at10/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41280OsAffx.15057.1.S1_at11/115+24097147..24098979Transcription factor HBP-1b, putative, expressed
LOC_Os05g41290Os.54368.2.S1_at11/115+24101239..24104701NB-ARC domain containing protein, expressed
LOC_Os05g41300OsAffx.19438.2.S1_x_at11/115+24107212..24109583hypothetical protein
LOC_Os05g41310Os.15501.1.S1_at8/115+24114006..24117335NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0007165biological_processsignal transduction
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15056.1.S1_s_at--723--9371Chr05:24092761..24092893 (25 bp)
TCGACGCCGACAACGACGGGAGGAT
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--704--5751Chr05:24092747..24092771 (25 bp)
GACGGGAGGATCAACTACACGGAGT
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--747--5431Chr05:24092688..24092712 (25 bp)
GAACCCGAAGAAGCGGCGCGACGTC
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--868--9411Chr05:24092665..24092689 (25 bp)
TCGTGCTGTAGATCGGAGCGGCCAT
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--917--8971Chr05:24092558..24092582 (25 bp)
TGAACCCCACACAAACATGCTTACA
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--7--631Chr05:24092542..24092566 (25 bp)
ATGCTTACACAACACACGCCATGTG
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--924--4331Chr05:24092524..24092548 (25 bp)
CCATGTGTTGCATAGGCGAATTTCT
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--955--191Chr05:24092505..24092529 (25 bp)
ATTTCTGTACTGCACAGCCATGGCA
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--836--2791Chr05:24092430..24092454 (25 bp)
AAGATGGGTGCTGTTCTTGTGTTCA
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--689--10551Chr05:24092417..24092441 (25 bp)
TTCTTGTGTTCAGCTCGGCTGTATA
LOC_Os05g41270
OsAffx.15056.1.S1_s_at--904--5451Chr05:24092389..24092413 (25 bp)
GAACTGTTCATACTCTTTTAACTGA
LOC_Os05g41270
Target Sequence 
TCGACGCCGACAACGACGGGAGGATCAACTACACGGAGTTCGTGGCCATGATGAGGAAAGGCGACCCGGAGGCGAACCCG
AAGAAGCGGCGCGACGTCGTGCTGTAGATCGGAGCGGCCATGGCAGGGGATCGATGGAGCTCAAGATTGAGAGGTGGATT
GGATTTCCTCAGGGTGGCCGGCGAGGAGAGAGAGCAAAGCACATGAACCCCACACAAACATGCTTACACAACACACGCCA
TGTGTTGCATAGGCGAATTTCTGTACTGCACAGCCATGGCAGGGGATCGGATCGAGATCGGGGGGAAGTGAGCCTGATGA
AGAACCATGTGAAGATGGGTGCTGTTCTTGTGTTCAGCTCGGCTGTATAATAGAACTGTTCATACTCTTTTAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15056.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis