Browse Element(s) Details


OsAffx.15062.1.S1_at

Description tigr:9633.m03921
TID=OsAffx.15062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ribosomal protein L11 methyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4180011/11Ribosomal protein L11 methyltransferase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41790Os.7361.1.S1_s_at11/115+24381048..24386108Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g41800Os.7148.1.A1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41800OsAffx.15062.1.S1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41810Os.18757.2.S1_x_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41810Os.18757.1.S1_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41820OsAffx.15063.1.S1_s_at11/115+24409253..24409946expressed protein
LOC_Os05g41830Os.46785.2.S1_x_at5/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.4592.1.S1_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.442.1.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.30226.2.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41840OsAffx.4592.1.S1_at11/115+24421248..24421871hypothetical protein
LOC_Os05g41850NANA5+24422889..24428432retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15062.1.S1_at--173--7291Chr05:24398937..24398961 (25 bp)
GTGCCTTCTGCTTCTACGGGAAACA
LOC_Os05g41800
OsAffx.15062.1.S1_at--424--5691Chr05:24398986..24399010 (25 bp)
GACTATGGAACAGGCACCGGAGTTT
LOC_Os05g41800
OsAffx.15062.1.S1_at--790--3391Chr05:24399020..24399130 (25 bp)
CAGCTCTGAAGATGGGTGCGGCACT
LOC_Os05g41800
OsAffx.15062.1.S1_at--553--7951Chr05:24399139..24399163 (25 bp)
GGATAGACATAGACCCTCAAGCTGT
LOC_Os05g41800
OsAffx.15062.1.S1_at--1152--4711Chr05:24399159..24399183 (25 bp)
GCTGTAACCTCTGCTTGTGAAAATA
LOC_Os05g41800
OsAffx.15062.1.S1_at--556--8591Chr05:24399226..24399250 (25 bp)
TGGTACCAACTAATGCTCAGTCTGC
LOC_Os05g41800
OsAffx.15062.1.S1_at--691--871Chr05:24399288..24399312 (25 bp)
AGGCCCACTGGTAACCTTGAGTTGA
LOC_Os05g41800
OsAffx.15062.1.S1_at--593--51Chr05:24399336..24399360 (25 bp)
ATTGTTGCCGCAAATATACTCCTGA
LOC_Os05g41800
OsAffx.15062.1.S1_at--964--5251Chr05:24399359..24399383 (25 bp)
GAATCCCCTGCTGGAGCTGGTTGAG
LOC_Os05g41800
OsAffx.15062.1.S1_at--224--491Chr05:24399404..24399428 (25 bp)
ATCTGGTGGAATAGTTGCTGTCTCA
LOC_Os05g41800
OsAffx.15062.1.S1_at--502--5371Chr05:24399563..24399587 (25 bp)
GAAGAAGCTTACTCCAGATACTTGG
LOC_Os05g41800
Target Sequence 
GTGCCTTCTGCTTCTACGGGAAACAGTTAAAGGGGGTGAACGTTTCTTGGACTATGGAACAGGCACCGGAGTTTTGGGAA
TTGCAGCTCTGAAGATGGGTGCGGCACTGTCCAATGGGATAGACATAGACCCTCAAGCTGTAACCTCTGCTTGTGAAAAT
ATGATGTTGAATGGTATAGATTCCAACAAAATGCTTGTTTACTTGGTACCAACTAATGCTCAGTCTGCATGCTTTCCAAG
TAATATTGACAAATCAGAAGAGAACAGGCCCACTGGTAACCTTGAGTTGAAGTCGTCAAAAGGATCATATGACATTGTTG
CCGCAAATATACTCCTGAATCCCCTGCTGGAGCTGGTTGAGGACATTGTTGGTTATGCAAAATCTGGTGGAATAGTTGCT
GTCTCAGGGATATTAAGTGAACAGGTGCCGAAAGTTGAAGAAGCTTACTCCAGATACTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis