Browse Element(s) Details


OsAffx.15110.1.S1_at

Description tigr:9633.m04220
TID=OsAffx.15110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4514011/11UDP-glycosyltransfersase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g45140OsAffx.15110.1.S1_at11/115+26128341..26129162UDP-glycosyltransfersase, putative
LOC_Os05g45150OsAffx.27314.1.S1_at10/115+26132020..26134877Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45160NANA5+26135286..26139326retrotransposon protein, putative, unclassified
LOC_Os05g45170Os.48555.1.S1_at11/115+26140159..26141126expressed protein
LOC_Os05g45180Os.51124.1.S1_at11/115+26142402..26144398UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45190OsAffx.15111.1.S1_at8/115+26147547..26148183hypothetical protein
LOC_Os05g45200Os.57078.1.S1_at11/115+26152346..26153859UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15110.1.S1_at--18--3011Chr05:26128853..26128877 (25 bp)
AATGAGTGCCTCCATGACTTCCTGT
LOC_Os05g45140
OsAffx.15110.1.S1_at--515--7191Chr05:26128796..26128820 (25 bp)
GTCGTGGACCCTCTGTCCGTAGAAG
LOC_Os05g45140
OsAffx.15110.1.S1_at--867--6931Chr05:26128778..26128802 (25 bp)
GTAGAAGCCCTCGACGTTGCCAAGA
LOC_Os05g45140
OsAffx.15110.1.S1_at--155--2791Chr05:26128757..26128781 (25 bp)
AAGAGGCTCAACGTTCCCGGCTACG
LOC_Os05g45140
OsAffx.15110.1.S1_at--1109--3811Chr05:26128694..26128718 (25 bp)
CTCCAGCTTCCATTGATCCGTGCAG
LOC_Os05g45140
OsAffx.15110.1.S1_at--1000--10651Chr05:26128606..26128630 (25 bp)
TTCCGGTTTCTTACCTCTATGAGGA
LOC_Os05g45140
OsAffx.15110.1.S1_at--325--3691Chr05:26128590..26128614 (25 bp)
CTATGAGGAACTTCTCGAGGACCCG
LOC_Os05g45140
OsAffx.15110.1.S1_at--1069--3531Chr05:26128545..26128569 (25 bp)
CATCGTGGATTTGTTTCACAGGGAT
LOC_Os05g45140
OsAffx.15110.1.S1_at--447--9691Chr05:26128530..26128554 (25 bp)
TCACAGGGATATTCAAGACTCCAAT
LOC_Os05g45140
OsAffx.15110.1.S1_at--243--1411Chr05:26128515..26128539 (25 bp)
AGACTCCAATGGCTTCCTGATGAAC
LOC_Os05g45140
OsAffx.15110.1.S1_at--263--3871Chr05:26128499..26128523 (25 bp)
CTGATGAACACGTTCGAGTCGCTCG
LOC_Os05g45140
Target Sequence 
AATGAGTGCCTCCATGACTTCCTGTGCTCCATGCCTCCCGGTGGTGCACACGCCCTCGTCGTGGACCCTCTGTCCGTAGA
AGCCCTCGACGTTGCCAAGAGGCTCAACGTTCCCGGCTACGTCTTCCACCCAGGGAACGCCAGCGCCTTCGCCATCCACC
TCCAGCTTCCATTGATCCGTGCAGAGGGTCAGCCAAGCTTCAGGGAGCTAGGAGACACCCCTCTCGAGCTCCCTGGCCTC
CCACCCATTCCGGTTTCTTACCTCTATGAGGAACTTCTCGAGGACCCGGAGAGCGAAGTGTACAAGGCCATCGTGGATTT
GTTTCACAGGGATATTCAAGACTCCAATGGCTTCCTGATGAACACGTTCGAGTCGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis