Browse Element(s) Details


OsAffx.15118.1.S1_at

Description tigr:9633.m04306
TID=OsAffx.15118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g459208/11S1 RNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45880OsAffx.27333.1.S1_at9/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45880Os.11760.1.S1_at1/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45890Os.19143.1.S1_at11/115+26508541..26513219tRNAHis guanylyltransferase family protein, expressed
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45910Os.7768.1.S1_at8/115+26521718..26523938expressed protein
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed
LOC_Os05g45930Os.4979.1.S1_at11/115+26533272..26537588IQ calmodulin-binding motif family protein, expressed
LOC_Os05g45940OsAffx.27334.1.S1_at11/115+26541060..26541486hypothetical protein
LOC_Os05g45950Os.4771.1.S1_at11/115+26544902..26548295Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os05g45960Os.14081.1.S1_at11/115+26551605..26557592aldehyde dehydrogenase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15118.1.S1_at--278--6151Chr05:26528214..26528235 (22 bp)
GAGGTGGATTGCTACATGTCTCAAA
LOC_Os05g45920
OsAffx.15118.1.S1_at--537--7411Chr05:26528303..26528327 (25 bp)
GTGATTAAATCAACAGCCCCGGGCA
LOC_Os05g45920
OsAffx.15118.1.S1_at--1075--3971Chr05:26528322..26528457 (25 bp)
CGGGCAGAATTGCTCTCAGTACCAA
LOC_Os05g45920
OsAffx.15118.1.S1_at--937--5831Chr05:26528459..26528483 (25 bp)
GACCTTGAGAGCGAACCTGGACTGT
LOC_Os05g45920
OsAffx.15118.1.S1_at--326--1771Chr05:26528473..26528497 (25 bp)
ACCTGGACTGTTTCTCTCTAACAAG
LOC_Os05g45920
OsAffx.15118.1.S1_at--851--8891Chr05:26528944..26528968 (25 bp)
TGAGTTAGACTCCTCGTTCGACGAG
LOC_Os05g45920
OsAffx.15118.1.S1_at--412--5771Chr05:26528984..26529008 (25 bp)
GACGAGGCAGTGTCTTATGCGAACT
LOC_Os05g45920
OsAffx.15118.1.S1_at--909--10451Chr05:26529048..26529068 (21 bp)
TTAACCCTCGTGCTGAATCGGCTAA
LOC_Os05g45920
OsAffx.15118.1.S1_at--859--2951Chr05:26529998..26530375 (25 bp)
AATGGCACTTTTTATTATCCCGCTT
NONE
OsAffx.15118.1.S1_at--967--4211Chr05:26530370..26530394 (25 bp)
CCGCTTCAGTACTCGGTAGCAGTAT
NONE
OsAffx.15118.1.S1_at--1105--8251Chr05:26530450..26530474 (25 bp)
GGCAGCTTCAAGTACCCGATTTACT
NONE
Target Sequence 
GAGGTGGATTGCTACATGTCTCAAATATAACACGGGGGCAGCTAACATCCGTTGGTGATGTGCTAAAAGTGGGTGAGGAA
GTGAAAGCTATCGTGATTAAATCAACAGCCCCGGGCAGAATTGCTCTCAGTACCAAGGACCTTGAGAGCGAACCTGGACT
GTTTCTCTCTAACAAGGAGAAGGTGTTCTCCGAGGCTGAAGAGATGGCGCAAAGATACCGGGACCAAATTTCAGAGAAGC
ATCAACCAGCTGAGTTAGACTCCTCGTTCGACGAGGTTGCTCCCTTTGACGACGAGGCAGTGTCTTATGCGAACTGGAAG
TGGTTAAGATTCAGCAAATCTGACAAAACAAACTTTAACCCTCGTGCTGAATCGGCTAATGGCACTTTTTATTATCCCGC
TTCAGTACTCGGTAGCAGTATCTTCAGGGATACTGAGTATAGTAGTCGTACTGGCAGGAAATTGAAGGCCGGCAATGGCA
GCTTCAAGTACCCGATTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis