Browse Element(s) Details


OsAffx.15141.3.S1_s_at

Description tigr:9633.m04475
TID=OsAffx.15141.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Anti-silencing protein, ASF1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0979011/11hypothetical protein
LOC_Os05g4803011/11Anti-silencing protein 1, putative, expressed
LOC_Os12g013201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed
LOC_Os08g09760Os.18985.1.S1_at11/118+5631925..5636857F-box domain containing protein, expressed
LOC_Os08g09770Os.54759.1.S1_at2/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09770OsAffx.24785.1.S1_x_at1/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09780Os.53513.1.S1_at11/118+5646337..5649305expressed protein
LOC_Os08g09790OsAffx.15141.3.S1_s_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790OsAffx.15141.2.S1_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.50851.1.S1_at6/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.8747.1.S2_x_at1/118+5652383..5656315hypothetical protein
LOC_Os08g09800Os.55100.1.S1_at1/118+5657234..5663062hAT family dimerisation domain containing protein
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15141.3.S1_s_at--317--352Chr08:5653274..5653298 (25 bp)
ATCAAACCCTAACGTCGATCCGGAG
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--117--1792Chr08:5653381..5653405 (25 bp)
ACCGTCGAGCCGTCAATCGTGGCAG
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--42--512Chr08:5653396..5653420 (25 bp)
ATCGTGGCAGCCAATCGTTTCGTCG
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--309--3052Chr08:5653408..5653432 (25 bp)
AATCGTTTCGTCGTTCGTCCACAAG
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--752--9212Chr08:5653425..5653449 (25 bp)
TCCACAAGCAGCAAGCAGATCCAGT
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--1147--5033Chr12:184352..184549 (25 bp)
GCAGATCCAGTCAGCACAAGCAACA
LOC_Os12g01320
OsAffx.15141.3.S1_s_at--1118--5052Chr08:5653465..5653489 (25 bp)
GCAGCATCAAGCAATCAAATCCACA
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--677--3033Chr08:5653482..5653506 (25 bp)
AATCCACAAGCAAGCAGCGGATGCA
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--988--1532Chr08:5653513..5653537 (25 bp)
AGCATTCAGATCCAGTTCTTCGTCA
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--825--1892Chr08:5653540..5653564 (25 bp)
ACGTCAGTCGTAGCCAGGCCGTACT
LOC_Os08g09790
OsAffx.15141.3.S1_s_at--488--7012Chr08:5653560..5653584 (25 bp)
GTACTCGTCGCGGATCTTGTCGTCG
LOC_Os08g09790
Target Sequence 
ATCAAACCCTAACGTCGATCCGGAGTCCACGCCGGCACGCCGGTGGCAGCTCGCCACCGGCGAGCCCATCCAATCCGTGC
ACATCCTCGTCAGCTTCGTCGTCCACCACCGTCGAGCCGTCAATCGTGGCAGCCAATCGTTTCGTCGTTCGTCCACAAGC
AGCAAGCAGATCCAGTCAGCACAAGCAACAAGCAGCATCAAGCAATCAAATCCACAAGCAAGCAGCGGATGCATGAACAA
GCATTCAGATCCAGTTCTTCGTCACCACGTCAGTCGTAGCCAGGCCGTACTCGTCGCGGATCTTGTCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15141.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis