Browse Element(s) Details


OsAffx.15215.1.S1_x_at

Description gb:NM_185322.1
DB_XREF= gi:34897729
TID=OsAffx.15215.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g016006/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01550Os.43567.1.S1_x_at7/116+326878..327657transposon protein, putative, unclassified
LOC_Os06g01550Os.38172.1.S1_x_at3/116+326878..327657transposon protein, putative, unclassified
LOC_Os06g01560NANA6+329733..335889retrotransposon protein, putative, unclassified
LOC_Os06g01570NANA6+336519..339810retrotransposon protein, putative, unclassified
LOC_Os06g01580NANA6+343157..344655Protease inhibitor/seed storage/LTP family protein
LOC_Os06g01590Os.31913.1.S1_at11/116+346009..347516L-lactate dehydrogenase A, putative, expressed
LOC_Os06g01600OsAffx.15215.1.S1_x_at6/116+350614..350976hypothetical protein
LOC_Os06g01610OsAffx.15216.1.S1_at11/116+358669..360582Vacuolar processing enzyme precursor, putative
LOC_Os06g01620Os.31716.2.A1_at9/116+364316..366066GRAS family transcription factor containing protein, expressed
LOC_Os06g01630Os.22911.1.S1_a_at11/116+369096..373968pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640Os.49738.1.S1_at11/116+374706..381665Protein arginine N-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15215.1.S1_x_at--671--3472Chr06:350897..350921 (25 bp)
CAGGCAAGGGCAGCCGGGCTCGGCA
LOC_Os06g01600
OsAffx.15215.1.S1_x_at--851--8311Chr06:350881..350905 (25 bp)
GGCTCGGCAGCGCAACAACGCCAAG
LOC_Os06g01600
OsAffx.15215.1.S1_x_at--594--4591Chr06:350872..350896 (25 bp)
GCGCAACAACGCCAAGAGCGCGGCT
LOC_Os06g01600
OsAffx.15215.1.S1_x_at--165--2471Chr06:350868..350892 (25 bp)
AACAACGCCAAGAGCGCGGCTGCTC
LOC_Os06g01600
OsAffx.15215.1.S1_x_at--218--3491Chr06:350843..350867 (25 bp)
CAGGCCGACTTCAGGAGGCTGGATC
LOC_Os06g01600
OsAffx.15215.1.S1_x_at--757--2211Chr06:350702..350726 (25 bp)
ACAATGTCGCATGCCATCAAGCTGG
LOC_Os06g01600
OsAffx.15215.1.S1_x_at--270--291Chr06:350520..350544 (25 bp)
ATAGTTTCAATGATGATCAGCGAGC
NONE
OsAffx.15215.1.S1_x_at--516--6831Chr06:350517..350541 (25 bp)
GTTTCAATGATGATCAGCGAGCTGG
NONE
OsAffx.15215.1.S1_x_at--634--8871Chr06:350510..350534 (25 bp)
TGATGATCAGCGAGCTGGCGACAGC
NONE
OsAffx.15215.1.S1_x_at--92--5651Chr06:350491..350515 (25 bp)
GACAGCGGCTTCGATGGTGACGGTT
NONE
OsAffx.15215.1.S1_x_at--1129--9372Chr05:16655296..16655435 (25 bp)
TCGATGGTGACGGTTGGCGAGCGGC
NONE
Target Sequence 
CAGGCAAGGGCAGCCGGGCTCGGCAGCGCAACAACGCCAAGAGCGCGGCTGCTCCAGGCCGACTTCAGGAGGCTGGATCG
GATGGCACCGGCGCCGGCGCGGCGAGGCTCAAGCCGTCGCTGCGGGCGCTCTTCTCATGCGGGATCTTCAGCGCCTGCAC
GCATCTAGCACTCAGCCCGACGGTGACGCCCAACAACAATGTCGCATGCCATCAAGCTGGTTGTGGAGGCGGCGTCGTCG
CTGGTTGTGGAGGCGGCGGCGGAGNTGACGGNGGNNGCNGCNNNNNGCGNNGGNNNNNGNNNNGNNGNGATAGTTTCAAT
GATGATCAGCGAGCTGGCGACAGCGGCTTCGATGGTGACGGTTGGCGAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15215.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis