Browse Element(s) Details


OsAffx.15220.2.S1_s_at

Description gb:NM_189173.1
DB_XREF= gi:34905429
GEN=P0487H02.8
TID=OsAffx.15220.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0487H02.8 (P0487H02.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0338011/11hypothetical protein
LOC_Os01g1931011/11retrotransposon protein, putative, LINE subclass
LOC_Os04g4705911/11Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g336908/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g484708/11retrotransposon protein, putative, unclassified
LOC_Os07g024908/11retrotransposon protein, putative, unclassified
LOC_Os06g018008/11retrotransposon protein, putative, unclassified, expressed
LOC_Os09g238107/11hypothetical protein
LOC_Os04g026005/11retrotransposon protein, putative, LINE subclass
LOC_Os04g043401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15220.2.S1_s_at--839--7518Chr11:26995458..26995482 (25 bp)
GTGGATCGATGGTCGCTCGATAGCT
NONE
OsAffx.15220.2.S1_s_at--768--819Chr11:26995466..26995490 (25 bp)
ATGGTCGCTCGATAGCTTCTATAGC
NONE
OsAffx.15220.2.S1_s_at--696--64910Chr11:26995476..26995500 (25 bp)
GATAGCTTCTATAGCTCCTGACCTC
NONE
OsAffx.15220.2.S1_s_at--924--536Chr07:6986376..6986400 (25 bp)
ATCGCGCACAGTTGCTGCTGGGTTA
NONE
OsAffx.15220.2.S1_s_at--335--61710Chr07:28996778..28996802 (25 bp)
GAGGATCACCTCGTCTGGCGTTGGA
LOC_Os07g48470
OsAffx.15220.2.S1_s_at--546--107713Chr11:26995686..26995709 (24 bp)
TTGGACGGGTGACCAGTGCTACTCA
NONE
OsAffx.15220.2.S1_s_at--178--2018Chr07:28996860..28996884 (25 bp)
ACTCTTTTGCCTGTGCCGACTTACT
LOC_Os07g48470
OsAffx.15220.2.S1_s_at--749--91313Chr11:26995834..26995858 (25 bp)
TGCTGGACTGCCGATCTTCTCCAAA
NONE
OsAffx.15220.2.S1_s_at--646--64111Chr11:26995846..26995870 (25 bp)
GATCTTCTCCAAAAGCGTGGTATCG
NONE
OsAffx.15220.2.S1_s_at--169--75116Chr11:26995862..26995886 (25 bp)
GTGGTATCGATAGCCACTCTGCTTG
NONE
OsAffx.15220.2.S1_s_at--567--5116Chr11:26995930..26995954 (25 bp)
ATCGATTGCGTGTTCGCTCGGCAGG
NONE
Target Sequence 
GTGGATCGATGGTCGCTCGATAGCTTCTATAGCTCCTGACCTCCTCCACGTCGTGCCTCCACGCTTCCGGGGATCGCGCA
CAGTTGCTGCTGGGTTAGCGAACAACTCCTGGGTTGGTGACATATGTGGCGCCCTCACTGTCCCGGTCATCTCTCAGTTC
CTGTTAGTCTGGGACGCGGTGGTTCCTACCCAGCTCTCGCCGGGTGTTGAGGATCACCTCGTCTGGCGTTGGACGGGTGA
CCAGTGCTACTCAGCGCAATCGGCGTATCAGGCGTTCTTCCTTGGCCAGCACTCTTTTGCCTGTGCCGACTTACTCTGGC
ACGCGAAGGGCCCTGCTAAATGCAAGTTCTTCCTTTGGTTTGCATTTGAGCAGCGCTGCTGGACTGCCGATCTTCTCCAA
AAGCGTGGTATCGATAGCCACTCTGCTTGCCCCTTTTGCGCTCAGGAGCTTGAGACAGCGAACCACATCCTCATCGATTG
CGTGTTCGCTCGGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15220.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis