Browse Element(s) Details


OsAffx.15220.5.S1_at

Description tigr:9630.m00239
TID=OsAffx.15220.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g033809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15220.5.S1_at--61--10531Chr02:1372116..1372140 (25 bp)
TTCAGAAGCGTTGCTGGACTGCCGA
LOC_Os02g03380
OsAffx.15220.5.S1_at--785--551Chr02:1372327..1372811 (25 bp)
ATCCTCCAGGGTGAATGAGCCACTT
LOC_Os02g03380
OsAffx.15220.5.S1_at--803--5271Chr02:1372799..1372823 (25 bp)
GAATGAGCCACTTGATATGAAGAAT
LOC_Os02g03380
OsAffx.15220.5.S1_at--516--5231Chr02:1372820..1372844 (25 bp)
GAATATAGACCTTGCGTTGGACAAA
LOC_Os02g03380
OsAffx.15220.5.S1_at--920--6611NONE
GTTGGACAAAACAATAGCTGACCTG
NONE
OsAffx.15220.5.S1_at--168--1611Chr02:1373381..1373405 (25 bp)
AGCTGACCTGTCAGAGGGTGGAAAT
LOC_Os02g03380
OsAffx.15220.5.S1_at--900--3011NONE
AATGCTTCGGGCTTCAGGCCGAGCA
NONE
OsAffx.15220.5.S1_at--627--3411Chr02:1374031..1374055 (25 bp)
CAGAGGAAGAGCGAGCACATGACAT
LOC_Os02g03380
OsAffx.15220.5.S1_at--1121--1491Chr02:1374044..1374068 (25 bp)
AGCACATGACATCGGCGTCCAGTGG
LOC_Os02g03380
OsAffx.15220.5.S1_at--360--491Chr02:1374054..1374078 (25 bp)
ATCGGCGTCCAGTGGCATAACGACA
LOC_Os02g03380
OsAffx.15220.5.S1_at--823--5791Chr02:1374095..1374119 (25 bp)
GACGCATTCCCGAACACGATACGAT
LOC_Os02g03380
Target Sequence 
TTCAGAAGCGTTGCTGGACTGCCGATCTTCTCCAAAAGCGTGGTATCGATAGCCACTCTGCTTGCCCCTTTTGTGCTCAG
GAGCTTGAGACCGCGAACCACATCCTCATCGATTGCGTGTTCGCTCGGCAGGTCTGGCTCCGTGTGTTGTCCCCTCCTGG
CTGGGCTGCCCTCTCTCCCCCTCGTGGCAGCTGGCTCCAGGATTGGTGGTCATCCTCCAGGGTGAATGAGCCACTTGATA
TGAAGAATATAGACCTTGCGTTGGACAAAACAATAGCTGACCTGTCAGAGGGTGGAAATGCTTCGGGCTTCAGGCCGAGC
AGGCAGAGGAAGAGCGAGCACATGACATCGGCGTCCAGTGGCATAACGACAATGATGGTGGCGCCTCGACGCATTCCCGA
ACACGATACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15220.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis