Browse Element(s) Details


OsAffx.15271.1.S1_at

Description tigr:9634.m00435
TID=OsAffx.15271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PRP38 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g051506/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05110Os.3583.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110OsAffx.4726.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120OsAffx.15270.1.S1_at9/116+2261968..2262878hypothetical protein
LOC_Os06g05120Os.46584.1.S1_x_at2/116+2261968..2262878hypothetical protein
LOC_Os06g05130Os.11639.1.S1_at11/116+2273699..2278508Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g05140OsAffx.4727.1.S1_at11/116+2281573..2283864pentatricopeptide, putative
LOC_Os06g05150Os.38154.1.A1_at10/116+2284929..2285795expressed protein
LOC_Os06g05150OsAffx.15271.1.S1_at6/116+2284929..2285795expressed protein
LOC_Os06g05160Os.27076.1.S1_at10/116+2291601..2297802sulfate transporter 3.4, putative, expressed
LOC_Os06g05169NANA6+2310288..2310656NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15271.1.S1_at--454--7251Chr06:2285801..2285825 (25 bp)
GTCCGGAAGACATTGCCTTCAGCAA
NONE
OsAffx.15271.1.S1_at--947--6111Chr06:2285750..2285774 (25 bp)
GAGTGTGCAAGATCTTCACCCAGGA
LOC_Os06g05150
OsAffx.15271.1.S1_at--1116--1271Chr06:2285741..2285765 (25 bp)
AGATCTTCACCCAGGAGGCGACGAA
LOC_Os06g05150
OsAffx.15271.1.S1_at--58--5331Chr06:2285719..2285743 (25 bp)
GAAGTCGGAGCCATGAACGTGATCA
LOC_Os06g05150
OsAffx.15271.1.S1_at--89--2591Chr06:2285704..2285728 (25 bp)
AACGTGATCATGATTCTGAGCGTGA
LOC_Os06g05150
OsAffx.15271.1.S1_at--423--5891Chr06:2285687..2285711 (25 bp)
GAGCGTGATCGTTCGGATCGTGACC
LOC_Os06g05150
OsAffx.15271.1.S1_at--78--3971Chr06:2285674..2285698 (25 bp)
CGGATCGTGACCGTGGTAGGCACAA
LOC_Os06g05150
OsAffx.15271.1.S1_at--9--6151Chr06:2284582..2284605 (24 bp)
GAGGTGATTCGTGATTTGCCCACAC
NONE
OsAffx.15271.1.S1_at--828--10271Chr06:2284568..2284592 (25 bp)
TTTGCCCACACCATTTACTGAAAAC
NONE
OsAffx.15271.1.S1_at--73--9931Chr06:2284553..2284577 (25 bp)
TACTGAAAACTTTCACGTCTCCATG
NONE
OsAffx.15271.1.S1_at--1064--591Chr06:2284531..2284555 (25 bp)
ATGCTGACCAAACCCTACAAGTACA
NONE
Target Sequence 
GTCCGGAAGACATTGCCTTCAGCAAGGGATAGAGAAAGGAGTTCTGATGGTGAGTGTGCAAGATCTTCACCCAGGAGGCG
ACGAAGTCGGAGCCATGAACGTGATCATGATTCTGAGCGTGATCGTTCGGATCGTGACCGTGGTAGGCACAAGGATAGGG
AGCATGATCGCCATGCCCGTGAGGACAGAGACCGTGATTACCGTCGTTCAAGCTATTCAAGTAGGAATGTTGACAGACAA
GGCCGTGAAAGGAGGGACAGGGATTCTGATCGACATGGACGTTCGAGTGCCCGCAGGAGCAGGAGCAGGAGTCCAAACCG
TGGCAGAACCGAAGGTGAAAATCACCGCTCTAGCCCATTTGGTAGACCACCAGAGCCATCCAACTTGGCAAAATTGAAGG
ATTTATATGGTGACGCGACAAACACAAAGGATGATACAGGTGATGATAAAGCTCGCAGGGATTCTGGAACTGAAGAGGTG
ATTCGTGATTTGCCCACACCATTTACTGAAAACTTTCACGTCTCCATGCTGACCAAACCCTACAAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis