Browse Element(s) Details


OsAffx.15274.1.S1_at

Description tigr:9634.m00477
TID=OsAffx.15274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0554011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05500NANA6+2483788..2492292transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g05510Os.55293.1.S1_at10/116+2496635..2497203expressed protein
LOC_Os06g05520OsAffx.15273.1.S1_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05520Os.8016.1.S1_a_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05530Os.50965.1.S1_at11/116+2504624..2508041expressed protein
LOC_Os06g05540OsAffx.15274.1.S1_at11/116+2509291..2509872hypothetical protein
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15274.1.S1_at--1008--5551Chr06:2509449..2509473 (25 bp)
GAAATCCCCCAAGCTGGCAAGGCAG
LOC_Os06g05540
OsAffx.15274.1.S1_at--318--9992Chr06:2509554..2509578 (25 bp)
TACCACCGAGGTGGTGCTCGTGCGC
LOC_Os06g05540
OsAffx.15274.1.S1_at--8--4472Chr06:2509627..2509651 (25 bp)
GCCGCGTCCAAACCTAGTAAGGCGC
LOC_Os06g05540
OsAffx.15274.1.S1_at--406--7071Chr06:2509643..2509667 (25 bp)
GTAAGGCGCAATCGGCACCGCGCAA
LOC_Os06g05540
OsAffx.15274.1.S1_at--228--911Chr06:2509673..2509697 (25 bp)
AGGCGGAGTCAATCGCTGGTGATCA
LOC_Os06g05540
OsAffx.15274.1.S1_at--739--3191Chr06:2509682..2509706 (25 bp)
CAATCGCTGGTGATCAGAAGGTGGA
LOC_Os06g05540
OsAffx.15274.1.S1_at--9--6031Chr06:2509705..2509729 (25 bp)
GAGATGGATGCTGGCTCCAATGGTT
LOC_Os06g05540
OsAffx.15274.1.S1_at--73--7492Chr06:2509778..2509802 (25 bp)
GTGGGCGGCCTTGGGACCTGACTGG
LOC_Os06g05540
OsAffx.15274.1.S1_at--353--8951Chr06:2509796..2509820 (25 bp)
TGACTGGGCTCATGTTACCACCATT
LOC_Os06g05540
OsAffx.15274.1.S1_at--1103--731Chr06:2509807..2509831 (25 bp)
ATGTTACCACCATTCCTGCCATGGG
LOC_Os06g05540
OsAffx.15274.1.S1_at--476--3591Chr06:2509817..2509841 (25 bp)
CATTCCTGCCATGGGCGCGGCATGG
LOC_Os06g05540
Target Sequence 
GAAATCCCCCAAGCTGGCAAGGCAGCCGCTCCTCGCGGTCGCGACCGAGGGGCCCGATCACGGCGAGGGGAATGGGTTGG
TGGCCGGAATCGAGGTCCCCGCTGCTACCACCGAGGTGGTGCTCGTGCGCCGCGCCTCCGCCGTGCGGAGGTACCCTCCG
GGCTGCGGGAGGGGTGCCGCCGCGTCCAAACCTAGTAAGGCGCAATCGGCACCGCGCAACGGCGAGGCGGAGTCAATCGC
TGGTGATCAGAAGGTGGAGATGGATGCTGGCTCCAATGGTTGGATGGATTGCGGAGGAGATGCCGGTGGTGTGCGGCAGG
AGGAAGGTGGTGGGCGGCCTTGGGACCTGACTGGGCTCATGTTACCACCATTCCTGCCATGGGCGCGGCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis