Browse Element(s) Details


OsAffx.15308.1.S1_at

Description tigr:9634.m00763
TID=OsAffx.15308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0827011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08220Os.48515.1.S1_at11/116+3980607..3981577expressed protein
LOC_Os06g08220OsAffx.27505.1.S1_s_at11/116+3980607..3981577expressed protein
LOC_Os06g08230OsAffx.27506.1.S1_at11/116+3982595..3983271hypothetical protein
LOC_Os06g08240OsAffx.15307.1.S1_at9/116+3989606..3992035hypothetical protein
LOC_Os06g08250OsAffx.27507.1.S1_at10/116+3992929..3995160hypothetical protein
LOC_Os06g08270OsAffx.15308.1.S1_at11/116+4003935..4004619hypothetical protein
LOC_Os06g08280Os.53574.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08280Os.37872.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08290Os.49775.1.S1_at9/116+4015075..4018297terminal acidic SANT 1, putative, expressed
LOC_Os06g08300OsAffx.4765.1.S1_s_at3/116+4018886..4021127FAD-dependent oxidoreductase family protein, putative
LOC_Os06g08310Os.8093.2.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.1.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.2.S1_x_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310OsAffx.5813.1.S1_x_at2/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15308.1.S1_at--1140--7551Chr06:4004562..4004586 (25 bp)
GGGCGCGACGCGAGCTTTGGTAGCT
LOC_Os06g08270
OsAffx.15308.1.S1_at--895--7691Chr06:4004537..4004561 (25 bp)
GGTGGAAAAAGTGCTTCGGCGCGAA
LOC_Os06g08270
OsAffx.15308.1.S1_at--603--5571Chr06:4004084..4004108 (25 bp)
GAAAGTGTTACCTGGCGAACACAGC
LOC_Os06g08270
OsAffx.15308.1.S1_at--1029--3711Chr06:4004051..4004075 (25 bp)
CTACGGCTTCCGGAAGTAGCTGTAG
LOC_Os06g08270
OsAffx.15308.1.S1_at--325--11Chr06:4004045..4004069 (25 bp)
CTTCCGGAAGTAGCTGTAGGGTCCA
LOC_Os06g08270
OsAffx.15308.1.S1_at--1008--8751Chr06:4004031..4004055 (25 bp)
TGTAGGGTCCAGTGTTTTTGCTTCC
LOC_Os06g08270
OsAffx.15308.1.S1_at--501--9191Chr06:4004024..4004048 (25 bp)
TCCAGTGTTTTTGCTTCCCGAGGTG
LOC_Os06g08270
OsAffx.15308.1.S1_at--1014--10651Chr06:4004010..4004034 (25 bp)
TTCCCGAGGTGTGCTCTTGATTATA
LOC_Os06g08270
OsAffx.15308.1.S1_at--939--4051Chr06:4004006..4004030 (25 bp)
CGAGGTGTGCTCTTGATTATAATAA
LOC_Os06g08270
OsAffx.15308.1.S1_at--22--371Chr06:4003985..4004009 (25 bp)
ATAATACTGCGTGTTTGGTGGCTCA
LOC_Os06g08270
OsAffx.15308.1.S1_at--1066--1971Chr06:4003980..4004004 (25 bp)
ACTGCGTGTTTGGTGGCTCAGCCAG
LOC_Os06g08270
Target Sequence 
GGGCGCGACGCGAGCTTTGGTAGCTGGTGGAAAAAGTGCTTCGGCGCGAAGGCAAGGGCGGAGGAGAGGGCGCGTGTCCG
CGCGGGGGAAAGTGTTACCTGGCGAACACAGCCCGACGGGCTACGGCTTCCGGAAGTAGCTGTAGGGTCCAGTGTTTTTG
CTTCCCGAGGTGTGCTCTTGATTATAATAATACTGCGTGTTTGGTGGCTCAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis