Browse Element(s) Details


OsAffx.15319.1.S1_at

Description tigr:9634.m00830
TID=OsAffx.15319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glucosyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0883010/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed
LOC_Os06g08800OsAffx.4772.1.S1_at11/116+4400652..4402236lmbW protein, putative
LOC_Os06g08810Os.54870.1.S1_at10/116+4403147..4405035NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08820OsAffx.15318.1.S1_at11/116+4409057..4410391Zinc finger, C3HC4 type family protein
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g08840Os.7772.1.S1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_x_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08850Os.26452.1.A1_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08850OsAffx.15320.1.S1_x_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08860Os.33759.1.S1_at11/116+4442022..4445511UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15319.1.S1_at--353--511Chr06:4418220..4418244 (25 bp)
ATCGTCCGCGGCTGGGTGCCACAGC
LOC_Os06g08830
OsAffx.15319.1.S1_at--596--5471NONE
GAACTCCGTGCTGGGAGAGCCTCGC
NONE
OsAffx.15319.1.S1_at--1077--1851Chr06:4417847..4417871 (25 bp)
ACGAGCTGCGGTCAAGCTACGTCGT
LOC_Os06g08830
OsAffx.15319.1.S1_at--1100--9131Chr06:4417841..4417865 (25 bp)
TGCGGTCAAGCTACGTCGTCGCCGG
LOC_Os06g08830
OsAffx.15319.1.S1_at--993--4571Chr06:4417791..4417815 (25 bp)
GCGAATGGCGGCAGTGGCAAGTGTT
LOC_Os06g08830
OsAffx.15319.1.S1_at--784--1091Chr06:4417779..4417803 (25 bp)
AGTGGCAAGTGTTGAGCGAACTGTA
LOC_Os06g08830
OsAffx.15319.1.S1_at--242--4591Chr06:4417764..4417788 (25 bp)
GCGAACTGTAGAACACGTCGACACA
LOC_Os06g08830
OsAffx.15319.1.S1_at--628--5471Chr06:4417754..4417778 (25 bp)
GAACACGTCGACACAGTGGTAACTG
LOC_Os06g08830
OsAffx.15319.1.S1_at--924--7831Chr06:4417737..4417761 (25 bp)
GGTAACTGTGAGTGATCGACGTCAT
LOC_Os06g08830
OsAffx.15319.1.S1_at--798--6111Chr06:4417728..4417752 (25 bp)
GAGTGATCGACGTCATGTCATTTTA
LOC_Os06g08830
OsAffx.15319.1.S1_at--759--8851Chr06:4417725..4417749 (25 bp)
TGATCGACGTCATGTCATTTTAAGT
LOC_Os06g08830
Target Sequence 
ATCGTCCGCGGCTGGGTGCCACAGCGCCGCGTGCTGTCCCACCCGGCGGTGGGCGCGTTCGTCACCCACGCCGGCTGGAA
CTCCGTGCTGGGAGAGCCTCGCCGCCGGCCTGCCGATGCTGGCGTGGCCGGTGATGGCGGAGCAGGCGGCGAACGCGAAG
CTCGTGGCGGACATCATCGGGGCCGGCGTCCGCGCGGTCCGCGGTGGCGGCGTCGTCGTCGGGCGCGCGGAGGTGGCCGG
CAAGGTCGGGCGGCTGATGGACGGCGGCGAGGAGGGCCGCGCGATCCGCGCCAGGGCCGAGGAGGTCCGGGAGGCGGCGC
GCGCGGCGGTGGGAGAAGGCGGCGCGTCGCGGGAGGCGCTGCGGCGGCTGGTCGACGAGCTGCGGTCAAGCTACGTCGTC
GCCGGCGACGGCACGGCGGCGGCGAGCTCGGCGAATGGCGGCAGTGGCAAGTGTTGAGCGAACTGTAGAACACGTCGACA
CAGTGGTAACTGTGAGTGATCGACGTCATGTCATTTTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis