Browse Element(s) Details


OsAffx.15366.1.S1_at

Description tigr:9634.m01077
TID=OsAffx.15366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g110509/11Cyclin-dependent kinase inhibitor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11020OsAffx.15365.1.S1_at11/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11020Os.5159.1.S1_at5/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11030NANA6+5777929..5778228EF hand family protein
LOC_Os06g11040Os.27377.1.S1_at10/116+5783168..5787999expressed protein
LOC_Os06g11050OsAffx.15366.1.S1_at9/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11050Os.54550.1.S1_at1/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11060Os.18657.1.S1_at11/116+5799189..5799850expressed protein
LOC_Os06g11070Os.23461.1.A1_at11/116+5806277..5810130expressed protein
LOC_Os06g11070OsAffx.4796.1.S1_s_at11/116+5806277..5810130expressed protein
LOC_Os06g11080OsAffx.4797.1.S1_at11/116+5811592..5812001hypothetical protein
LOC_Os06g11090Os.49572.1.A1_at11/116+5812498..5814197esterase, putative, expressed
LOC_Os06g11100OsAffx.22063.1.S1_at1/116+5816259..5819852retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15366.1.S1_at--89--9371Chr06:5794122..5794146 (25 bp)
TCGAGCGACGCGGAGTCAAACCAGG
LOC_Os06g11050
OsAffx.15366.1.S1_at--827--6091Chr06:5794110..5794134 (25 bp)
GAGTCAAACCAGGAGGCCAAGCAGC
LOC_Os06g11050
OsAffx.15366.1.S1_at--216--1511Chr06:5794091..5794115 (25 bp)
AGCAGCAAATGTGCCGCCGGAGTTC
LOC_Os06g11050
OsAffx.15366.1.S1_at--1037--9651Chr06:5794059..5794083 (25 bp)
TCAGCAGCTGCATTTCACGCGGGAG
LOC_Os06g11050
OsAffx.15366.1.S1_at--565--8091NONE
GGACCGCGCGTTTTGATTCAGATTC
NONE
OsAffx.15366.1.S1_at--598--10531Chr06:5793385..5793409 (25 bp)
TTCAGATTCAAACTGGGCTGCCTTG
LOC_Os06g11050
OsAffx.15366.1.S1_at--273--2391Chr06:5793376..5793400 (25 bp)
AAACTGGGCTGCCTTGGGCCAACGT
LOC_Os06g11050
OsAffx.15366.1.S1_at--1037--3231NONE
CAACGTGTTACGAGGGTTTTGCTGA
NONE
OsAffx.15366.1.S1_at--245--7613Chr06:5791414..5791556 (25 bp)
GGGAAGCGCCAGTGCTCGAACCCCG
NONE
OsAffx.15366.1.S1_at--280--5651Chr06:5790526..5790550 (25 bp)
GACAGCACGCACACGAGGGACGTCA
LOC_Os06g11050
OsAffx.15366.1.S1_at--1078--2153Chr06:5791605..5791638 (25 bp)
ACACGAGGGACGTCACGTGGCTGCT
NONE
Target Sequence 
TCGAGCGACGCGGAGTCAAACCAGGAGGCCAAGCAGCAAATGTGCCGCCGGAGTTCGACGACCTCAGCAGCTGCATTTCA
CGCGGGAGCGACGACGAGGAGCTTCAGGATGATGGCACCGCCGGCGGCGGCGGCAGAGATCGAGGAGTTCCTCGCCGCTG
CGGAGAGGTCCGAGGCCGAGCGCTTCGCCGCCAAGTACAACTTCGACGTGGTGCGCGGCGTGCCGCTCGACGCCGGCGGC
GCCGGGCGGTTCGAATGGACCGCGCGTTTTGATTCAGATTCAAACTGGGCTGCCTTGGGCCAACGTGTTACGAGGGTTTT
GCTGAACAATCCAAGCTGTAAACCGAGGCTTCGATTGGCAGCGAGTGCTGAGAATCCGGTTGATTTCAGTGGTGTTGACG
TGCGGCTCCCCATGCTAGTGTACATCTCGCGCGAGAAGCCGTGCGCCGGGAAGCGCCAGTGCTCGAACCCCGCCGCCGCG
TCGCCCGACCTCGCCGGCGCCTCCACCTGCGACAGCACGCACACGAGGGACGTCACGTGGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis