Browse Element(s) Details


OsAffx.15382.1.S1_at

Description tigr:9634.m01206
TID=OsAffx.15382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1227010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12240OsAffx.15381.1.S1_at9/116+6583406..6584966hypothetical protein
LOC_Os06g12250Os.5511.1.S1_s_at11/116+6588824..6590792Protein SUR2, putative, expressed
LOC_Os06g12260Os.17863.1.S1_at11/116+6594965..6601477expressed protein
LOC_Os06g12270OsAffx.15382.1.S1_at10/116+6602976..6603636hypothetical protein
LOC_Os06g12280OsAffx.15383.1.S1_at11/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12280Os.11704.1.S1_at1/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12290OsAffx.15384.1.S1_at11/116+6611662..6612441Glutathione S-transferase, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15382.1.S1_at--727--7551Chr06:6603006..6603475 (25 bp)
GGGCCAATATCTTTCCATATTTTCT
LOC_Os06g12270
OsAffx.15382.1.S1_at--26--451NONE
ATCTTTCCATATTTTCTTCGTATTA
NONE
OsAffx.15382.1.S1_at--207--4331Chr06:6603465..6603489 (25 bp)
CCATATTTTCTTCGTATTACTCAAA
LOC_Os06g12270
OsAffx.15382.1.S1_at--671--2451Chr06:6603487..6603511 (25 bp)
AAAATATTGACTAGCCACTTCTTGG
LOC_Os06g12270
OsAffx.15382.1.S1_at--298--5711Chr06:6603495..6603519 (25 bp)
GACTAGCCACTTCTTGGCAAAAGAA
LOC_Os06g12270
OsAffx.15382.1.S1_at--741--8231Chr06:6603510..6603534 (25 bp)
GGCAAAAGAATCACAGCATGATCAA
LOC_Os06g12270
OsAffx.15382.1.S1_at--1036--5231Chr06:6603517..6603541 (25 bp)
GAATCACAGCATGATCAAATACATA
LOC_Os06g12270
OsAffx.15382.1.S1_at--411--3091Chr06:6603534..6603558 (25 bp)
AATACATATTTCTCATGGACAGACG
LOC_Os06g12270
OsAffx.15382.1.S1_at--725--2131Chr06:6603552..6603576 (25 bp)
ACAGACGGCAGCTGGTGAGTCCACT
LOC_Os06g12270
OsAffx.15382.1.S1_at--1023--5731Chr06:6603555..6603579 (25 bp)
GACGGCAGCTGGTGAGTCCACTAAG
LOC_Os06g12270
OsAffx.15382.1.S1_at--321--7391Chr06:6603566..6603590 (25 bp)
GTGAGTCCACTAAGGGTGAGTTTGA
LOC_Os06g12270
Target Sequence 
GGGCCAATATCTTTCCATATTTTCTTCGTATTACTCAAAATATTGACTAGCCACTTCTTGGCAAAAGAATCACAGCATGA
TCAAATACATATTTCTCATGGACAGACGGCAGCTGGTGAGTCCACTAAGGGTGAGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis