Browse Element(s) Details


OsAffx.15389.1.S1_at

Description tigr:9634.m01226
TID=OsAffx.15389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1246011/11glycosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed
LOC_Os06g12410Os.9333.1.A1_s_at11/116+6735134..6736797GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g12430OsAffx.15388.1.S1_at11/116+6740343..6740946hypothetical protein
LOC_Os06g12440OsAffx.28657.2.S1_at11/116+6742784..6743850Protease inhibitor/seed storage/LTP family protein
LOC_Os06g12450Os.5738.1.S1_at11/116+6747359..6752337Soluble starch synthase 2-3, chloroplast precursor, putative, expressed
LOC_Os06g12460OsAffx.15389.1.S1_at11/116+6757182..6761996glycosyltransferase 5, putative, expressed
LOC_Os06g12470Os.33878.1.S1_at6/116+6763464..6771922expressed protein
LOC_Os06g12470OsAffx.21953.1.S1_at2/116+6763464..6771922expressed protein
LOC_Os06g12480Os.43764.1.A1_at11/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.7.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.2.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.3.S1_x_at1/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12490OsAffx.27584.1.S1_at11/116+6781327..6782881hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15389.1.S1_at--585--10711Chr06:6761270..6761294 (25 bp)
TTGCTCTACAGCTTCTTTTTTGTGA
LOC_Os06g12460
OsAffx.15389.1.S1_at--3--6991Chr06:6761315..6761339 (25 bp)
GTACCTTTCATGCTCTACTGTGTAG
LOC_Os06g12460
OsAffx.15389.1.S1_at--832--9911Chr06:6761330..6761354 (25 bp)
TACTGTGTAGTGATCCCGTTTTCGG
LOC_Os06g12460
OsAffx.15389.1.S1_at--510--8031Chr06:6761387..6761411 (25 bp)
GGAGTGGTTTATGTCCCAACAACAA
LOC_Os06g12460
OsAffx.15389.1.S1_at--918--1211Chr06:6761549..6761573 (25 bp)
AGTTCAATCCACTTCATACCATTCT
LOC_Os06g12460
OsAffx.15389.1.S1_at--975--5271Chr06:6761587..6761611 (25 bp)
GAATGTCATGTCGTTTCACCGAACA
LOC_Os06g12460
OsAffx.15389.1.S1_at--60--2371Chr06:6761695..6761719 (25 bp)
AAAGCCTGCATCTCAAATACTGGAA
LOC_Os06g12460
OsAffx.15389.1.S1_at--631--7191Chr06:6761843..6761867 (25 bp)
GTCGGAAATTCTGTTCTCCATCTTC
LOC_Os06g12460
OsAffx.15389.1.S1_at--892--7251Chr06:6761878..6761902 (25 bp)
GTGCGACCTACAACTTGGCGTATGG
LOC_Os06g12460
OsAffx.15389.1.S1_at--995--7991Chr06:6761901..6761925 (25 bp)
GGAGGCGACTACTATTTCGTTTACA
LOC_Os06g12460
OsAffx.15389.1.S1_at--572--291Chr06:6761940..6761964 (25 bp)
ATAGCATTTCTTGTCGTTGGCATCG
LOC_Os06g12460
Target Sequence 
TTGCTCTACAGCTTCTTTTTTGTGAGGAAGGTTGTTGCCCATGTGGTACCTTTCATGCTCTACTGTGTAGTGATCCCGTT
TTCGGTCCTAATCCCCGAGGTCACTGTTCCTGTTTGGGGAGTGGTTTATGTCCCAACAACAATAACACTTCTACATGCCA
TTAGAAACACAAGTTCAATCCACTTCATACCATTCTGGATCCTCTTTGAGAATGTCATGTCGTTTCACCGAACAAAGGCG
ATGTTCATCGGCTTGCTGGAGCTGGGTGGTGTGAATGAGTGGGTGGTTACTGAGAAGCTCGGCAATGGCAGCAACACAAA
GCCTGCATCTCAAATACTGGAACGGCCTCCCTGCAGGTTCTGGGACAGATGGACAATGTCGGAAATTCTGTTCTCCATCT
TCCTTTTCTTTTGTGCGACCTACAACTTGGCGTATGGAGGCGACTACTATTTCGTTTACATATACCTACAGGCTATAGCA
TTTCTTGTCGTTGGCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis