Browse Element(s) Details


OsAffx.15478.1.S1_at

Description tigr:9634.m01779
TID=OsAffx.15478.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1792010/11NB-ARC domain containing protein
LOC_Os06g179002/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17890OsAffx.15477.1.S1_at8/116+10381005..10382012hypothetical protein
LOC_Os06g17900OsAffx.15478.1.S1_at2/116+10386510..10389466NB-ARC domain containing protein
LOC_Os06g17910OsAffx.15478.3.S1_at11/116+10396098..10398254NBS-LRR disease resistance protein, putative
LOC_Os06g17920OsAffx.15478.1.S1_at10/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920Os.50906.1.S1_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.8356.1.S1_x_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.24024.1.S1_at1/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17930OsAffx.15478.2.S1_at11/116+10419704..10426558NBS-LRR disease resistance protein, putative
LOC_Os06g17940OsAffx.27690.1.S1_at10/116+10431044..10433306hypothetical protein
LOC_Os06g17950Os.34061.1.S2_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S1_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S3_at10/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15478.1.S1_at--1069--2251Chr06:10409684..10409708 (25 bp)
AAATCACCCCGTGCTGCGAATGAGG
LOC_Os06g17920
OsAffx.15478.1.S1_at--532--3331Chr06:10409724..10409748 (25 bp)
CACGACCTTGCTTGTGACGCCGAAG
LOC_Os06g17920
OsAffx.15478.1.S1_at--869--5791Chr06:10409739..10409763 (25 bp)
GACGCCGAAGGATCCCCTGTTGAAG
LOC_Os06g17920
OsAffx.15478.1.S1_at--707--8992Chr06:10409759..10409783 (25 bp)
TGAAGTGGAAGCAACGGATCCCCTC
LOC_Os06g17920
OsAffx.15478.1.S1_at--769--6012Chr06:10409797..10409821 (25 bp)
GAGAGAGCTCGCAGGTGATCACGTT
LOC_Os06g17920
OsAffx.15478.1.S1_at--650--5311NONE
GACGTCGAACAACAGGTGGATTACT
NONE
OsAffx.15478.1.S1_at--398--2032Chr06:10413538..10413562 (25 bp)
ACTACCCTCTAACCATCATTGGGAT
LOC_Os06g17920
OsAffx.15478.1.S1_at--1012--2251Chr06:10413564..10413662 (25 bp)
AAATCAAGACCGTCCAGGTATGGAC
LOC_Os06g17920
OsAffx.15478.1.S1_at--106--2931Chr06:10413906..10413930 (25 bp)
AAGGACCGTCAACAGCTGGCAACAA
LOC_Os06g17920
OsAffx.15478.1.S1_at--1097--1611Chr06:10413919..10414156 (25 bp)
AGCTGGCAACAATGGCCCTCATCGG
LOC_Os06g17920
OsAffx.15478.1.S1_at--1162--5011Chr06:10414234..10414258 (25 bp)
GCAGGGACAGCATGGCCATTGCCAG
LOC_Os06g17920
Target Sequence 
AAATCACCCCGTGCTGCGAATGAGGGAGGACCGAAGTGATCACGACCTTGCTTGTGACGCCGAAGGATCCCCTGTTGAAG
TGGAAGCAACGGATCCCCTCCCAGAGCAGGAGGGAGAGAGCTCGCAGGTGATCACGTTGACGTCGAACAACAGGTGGATT
ACTAAGACGGGATTCAGGGCTGTCACCACCTGCTATCTACCTCTGACAAATCCGTGGGATACAGAACAAACAAAGGTATG
GGAAATGACCAAACTACCCTCTAACCATCATTGGGATGAAATCAAGACCGTCCAGGTATGGACGGTCAAATGTTATGATT
TAAGGACCGTCAACAGCTGGCAACAATGGCCCTCATCGGGGGACGTGAGCAACGAGGTGGATTGTGAGAGGGAGGCGAGC
GTGAACGCTTCGAGCAGCGAGGCGGACCACGAGAGGGCAGGGACAGCATGGCCATTGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis