Browse Element(s) Details


OsAffx.15517.1.S1_s_at

Description tigr:9634.m01986
TID=OsAffx.15517.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2040011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20354OsAffx.27732.1.S1_s_at11/116+11692032..11694276expressed protein
LOC_Os06g20354Os.50852.1.S1_at11/116+11692032..11694276expressed protein
LOC_Os06g20354OsAffx.15515.1.S1_at10/116+11692032..11694276expressed protein
LOC_Os06g20370Os.12198.1.S1_a_at11/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370Os.12198.1.S1_at11/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370Os.12198.2.S1_x_at10/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370OsAffx.13408.1.S1_at1/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380OsAffx.15516.1.S1_at9/116+11703388..11705017hypothetical protein
LOC_Os06g20380Os.42235.1.S1_at1/116+11703388..11705017hypothetical protein
LOC_Os06g20390Os.5637.1.S1_at10/116+11711593..11716063expressed protein
LOC_Os06g20400Os.18614.1.S1_at11/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400OsAffx.15517.1.S1_s_at11/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400OsAffx.15517.1.S1_at10/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20410Os.24334.1.A1_at11/116+11724807..11733595BAH domain containing protein, expressed
LOC_Os06g20420OsAffx.27734.1.S1_at11/116+11733894..11734334hypothetical protein
LOC_Os06g20430Os.7081.1.S1_at11/116+11736127..11740014LBP/BPI / CETP family, N-terminal domain containing protein, expressed
LOC_Os06g20440NANA6+11741657..11745430transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g20450OsAffx.27736.1.S1_at11/116+11746557..11746873hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15517.1.S1_s_at--324--6952Chr04:34210892..34210916 (25 bp)
GTAGTTATGCTGCTGGTATGACCAT
NONE
OsAffx.15517.1.S1_s_at--71--9731Chr06:11719688..11719712 (25 bp)
TCAAGTTATCGTATATGGCCTCCAC
LOC_Os06g20400
OsAffx.15517.1.S1_s_at--271--10111Chr06:11719675..11719699 (25 bp)
TATGGCCTCCACTAGATTTTGAAAA
LOC_Os06g20400
OsAffx.15517.1.S1_s_at--535--5512Chr06:11719655..11719679 (25 bp)
GAAAATCTAGCATCAACTCGCCGTT
LOC_Os06g20400
OsAffx.15517.1.S1_s_at--563--9711Chr06:11719643..11719667 (25 bp)
TCAACTCGCCGTTCAATGGGTTATA
LOC_Os06g20400
OsAffx.15517.1.S1_s_at--993--6535Chr08:4023546..4023822 (25 bp)
GATTATTGGTACCTTGGCAAGCTCT
NONE
OsAffx.15517.1.S1_s_at--1020--2692Chr04:34211025..34211049 (25 bp)
AAGCTCTGCATTCTTCTTGTCAGCA
NONE
OsAffx.15517.1.S1_s_at--565--6771Chr06:11719550..11719574 (25 bp)
GTTACAGTATACCTTGCATTTGCTA
LOC_Os06g20400
OsAffx.15517.1.S1_s_at--869--10271Chr06:11719532..11719556 (25 bp)
TTTGCTAGTCTATCAGTTAACGCTG
LOC_Os06g20400
OsAffx.15517.1.S1_s_at--391--6771Chr06:11719517..11719541 (25 bp)
GTTAACGCTGGTATAGGTGTGCTGT
LOC_Os06g20400
OsAffx.15517.1.S1_s_at--269--7752Chr04:34211107..34211131 (25 bp)
GGTGTGCTGTTGTTCCAGCAACTTA
NONE
Target Sequence 
GTAGTTATGCTGCTGGTATGACCATTTATTCAAGTTATCGTATATGGCCTCCACTAGATTTTGAAAATCTAGCATCAACT
CGCCGTTCAATGGGTTATATAAAGATGCTAATTGAGATTATTGGTACCTTGGCAAGCTCTGCATTCTTCTTGTCAGCAAG
GGGTTTTGTTACAGTATACCTTGCATTTGCTAGTCTATCAGTTAACGCTGGTATAGGTGTGCTGTTGTTCCAGCAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15517.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis