Browse Element(s) Details


OsAffx.15555.1.S1_at

Description tigr:9634.m02201
TID=OsAffx.15555.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2245011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22410NANA6+13028815..13029183hypothetical protein
LOC_Os06g22420OsAffx.27768.1.S1_s_at11/116+13030175..13031067expressed protein
LOC_Os06g22430Os.46306.1.S1_x_at6/116+13033642..13039977transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g22440Os.52682.1.S1_at11/116+13040901..13043159SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g22450OsAffx.15555.1.S1_at11/116+13051783..13052172hypothetical protein
LOC_Os06g22460OsAffx.27769.1.S1_at11/116+13054163..13057028NB-ARC domain containing protein, expressed
LOC_Os06g22470OsAffx.27770.1.S1_x_at8/116+13060316..13061207hypothetical protein
LOC_Os06g22470Os.51841.1.S1_x_at1/116+13060316..13061207hypothetical protein
LOC_Os06g22480OsAffx.29300.1.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_x_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22490OsAffx.4902.1.S1_at11/116+13069022..13069936Sterol desaturase family protein
LOC_Os06g22500OsAffx.27771.2.S1_s_at11/116+13073538..13074388hypothetical protein
LOC_Os06g22500OsAffx.27771.1.S1_x_at7/116+13073538..13074388hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15555.1.S1_at--367--7711Chr06:13051818..13051842 (25 bp)
GGTGGCGACGGCTGATTCGCTCCTC
LOC_Os06g22450
OsAffx.15555.1.S1_at--1160--4731Chr06:13051828..13051852 (25 bp)
GCTGATTCGCTCCTCGCCGAGAAGG
LOC_Os06g22450
OsAffx.15555.1.S1_at--554--8011Chr06:13051891..13051915 (25 bp)
GGAGGCGGCAGTGCCGTATGTGGCC
LOC_Os06g22450
OsAffx.15555.1.S1_at--704--5951Chr06:13051951..13051975 (25 bp)
GAGCAATCTCAGTCCGAAGCAGCGA
LOC_Os06g22450
OsAffx.15555.1.S1_at--898--451Chr06:13051956..13051980 (25 bp)
ATCTCAGTCCGAAGCAGCGACGGCG
LOC_Os06g22450
OsAffx.15555.1.S1_at--588--991Chr06:13052027..13052051 (25 bp)
AGGAGGCCGCGGATGATGCTCGTCG
LOC_Os06g22450
OsAffx.15555.1.S1_at--922--9211Chr06:13052079..13052103 (25 bp)
TCCACTGCTGTCAACTGCACGGGTA
LOC_Os06g22450
OsAffx.15555.1.S1_at--977--4731Chr06:13052085..13052109 (25 bp)
GCTGTCAACTGCACGGGTAGTACTA
LOC_Os06g22450
OsAffx.15555.1.S1_at--945--2551Chr06:13052091..13052115 (25 bp)
AACTGCACGGGTAGTACTAGTGTGG
LOC_Os06g22450
OsAffx.15555.1.S1_at--931--3671Chr06:13052107..13052131 (25 bp)
CTAGTGTGGGAGAGAGATAAGCCTC
LOC_Os06g22450
OsAffx.15555.1.S1_at--514--6011Chr06:13052118..13052142 (25 bp)
GAGAGATAAGCCTCTCCGGCATGGG
LOC_Os06g22450
Target Sequence 
GGTGGCGACGGCTGATTCGCTCCTCGCCGAGAAGGAAGAAGACGCCGGCGGATGTGGCCGGGAGATGCGGAGCGGAGGCG
GCAGTGCCGTATGTGGCCGGCCGGGAGCGCAGGCGGCGACGCTTCCGCTGGGGGAGCAATCTCAGTCCGAAGCAGCGACG
GCGGCAGCACGATTCTCTCTCCACTCCCTTGACGCCGGCGGCCGCAAGCAGGAGGCCGCGGATGATGCTCGTCGTCGTGC
CGTCATGCCGCCGCATCGTCCTCCACTGCTGTCAACTGCACGGGTAGTACTAGTGTGGGAGAGAGATAAGCCTCTCCGGC
ATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis