Browse Element(s) Details


OsAffx.15563.1.S1_at

Description tigr:9634.m02251
TID=OsAffx.15563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2288011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22870OsAffx.15562.1.S1_s_at11/116+13344334..13348183Auxin-responsive protein IAA8, putative, expressed
LOC_Os06g22870Os.7687.1.S1_at10/116+13344334..13348183Auxin-responsive protein IAA8, putative, expressed
LOC_Os06g22880OsAffx.15563.1.S1_at11/116+13361904..13362250hypothetical protein
LOC_Os06g22890Os.26886.6.S1_s_at7/116+13365401..13368654transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22890Os.26886.2.S1_s_at6/116+13365401..13368654transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22890OsAffx.16467.1.S1_at1/116+13365401..13368654transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22900Os.26886.3.S1_x_at4/116+13370229..13374235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22900OsAffx.3774.1.S1_at1/116+13370229..13374235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22919OsAffx.4907.1.S1_x_at11/116+13374681..13389460Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919Os.33878.1.S1_at11/116+13374681..13389460Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919Os.51910.1.S1_x_at4/116+13374681..13389460Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919OsAffx.28164.2.S1_at2/116+13374681..13389460Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919Os.52051.1.S1_x_at2/116+13374681..13389460Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919Os.51910.1.S1_at2/116+13374681..13389460Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919Os.27037.1.A1_at1/116+13374681..13389460Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15563.1.S1_at--334--9591Chr06:13362188..13362212 (25 bp)
TCTTGTCCTCGTTGCGCTTGCTGCC
LOC_Os06g22880
OsAffx.15563.1.S1_at--278--9111Chr06:13362057..13362194 (25 bp)
TGCTGCCTCGGCAGCGTCGGATCAG
LOC_Os06g22880
OsAffx.15563.1.S1_at--590--8251Chr06:13362048..13362071 (24 bp)
GGCAGCGTCGGATCAGCCCCGTTGC
LOC_Os06g22880
OsAffx.15563.1.S1_at--123--3391Chr06:13362046..13362070 (25 bp)
CAGCGTCGGATCAGCCCCGTTGCTG
LOC_Os06g22880
OsAffx.15563.1.S1_at--1019--2471Chr06:13361996..13362020 (25 bp)
AACACCGGGTGCGGAGCAGATCAGA
LOC_Os06g22880
OsAffx.15563.1.S1_at--730--1271Chr06:13361979..13362003 (25 bp)
AGATCAGAAGGACGCCTGCAACACA
LOC_Os06g22880
OsAffx.15563.1.S1_at--867--9651Chr06:13361976..13362000 (25 bp)
TCAGAAGGACGCCTGCAACACATGG
LOC_Os06g22880
OsAffx.15563.1.S1_at--865--5291Chr06:13361973..13361997 (25 bp)
GAAGGACGCCTGCAACACATGGTGT
LOC_Os06g22880
OsAffx.15563.1.S1_at--299--971Chr06:13361971..13361995 (25 bp)
AGGACGCCTGCAACACATGGTGTCA
LOC_Os06g22880
OsAffx.15563.1.S1_at--99--8111Chr06:13361970..13361994 (25 bp)
GGACGCCTGCAACACATGGTGTCAG
LOC_Os06g22880
OsAffx.15563.1.S1_at--132--4171Chr06:13361967..13361991 (25 bp)
CGCCTGCAACACATGGTGTCAGTCG
LOC_Os06g22880
Target Sequence 
TCTTGTCCTCGTTGCGCTTGCTGCCTCGGCAGCGTCGGATCAGCCCCGTTGCTGCGTGGACTACCACTCGTGGGGAGGGA
ACACCGGGTGCGGAGCAGATCAGAAGGACGCCTGCAACACATGGTGTCAGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis