Browse Element(s) Details


OsAffx.15629.1.S1_at

Description tigr:9634.m02624
TID=OsAffx.15629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g275905/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27530OsAffx.24317.2.S1_x_at10/116+15586279..15587703hypothetical protein
LOC_Os06g27540OsAffx.30032.4.S1_at1/116+15588926..15593922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27550NANA6+15595294..15596839hypothetical protein
LOC_Os06g27560Os.7246.1.S1_s_at11/116+15600605..15602930HGA1, putative, expressed
LOC_Os06g27560Os.7246.2.S1_s_at10/116+15600605..15602930HGA1, putative, expressed
LOC_Os06g27570NANA6+15605249..15605884hypothetical protein
LOC_Os06g27580NANA6+15607455..15610167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27590OsAffx.15629.1.S1_at5/116+15610977..15611819expressed protein
LOC_Os06g27600NANA6+15617541..15619052retrotransposon protein, putative, unclassified
LOC_Os06g27610OsAffx.18868.4.S1_at11/116+15620655..15623546hypothetical protein
LOC_Os06g27610OsAffx.18868.5.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27610Os.50767.1.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27620OsAffx.27837.1.S1_at11/116+15626840..15627547hypothetical protein
LOC_Os06g27620OsAffx.6927.1.S1_at1/116+15626840..15627547hypothetical protein
LOC_Os06g27630NANA6+15628986..15630821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15629.1.S1_at--247--9191Chr06:15611618..15611642 (25 bp)
TGCCGGCGCGGCAACGACAGCCGAT
LOC_Os06g27590
OsAffx.15629.1.S1_at--245--3011NONE
AATGCAGCGAGGACATTATGTACAC
NONE
OsAffx.15629.1.S1_at--955--5671NONE
GACATTATGTACACTCATAGTCGTA
NONE
OsAffx.15629.1.S1_at--796--3571NONE
CATAGTCGTAAAGTAGCTGCGTTTT
NONE
OsAffx.15629.1.S1_at--245--9991NONE
TAGCTGCGTTTTTTAGATCGTTTAA
NONE
OsAffx.15629.1.S1_at--392--6311NONE
GATCGTTTAATCCTAGTTATTGGCT
NONE
OsAffx.15629.1.S1_at--352--3031NONE
AATCCTAGTTATTGGCTTCAAAGAG
NONE
OsAffx.15629.1.S1_at--230--3211Chr06:15611160..15611184 (25 bp)
CAAGGAATGGATAAGGTGGCACTGT
LOC_Os06g27590
OsAffx.15629.1.S1_at--640--3331Chr06:15611141..15611165 (25 bp)
CACTGTGTCGGCACAGTGGCGAAGC
LOC_Os06g27590
OsAffx.15629.1.S1_at--643--8531Chr06:15611099..15611123 (25 bp)
TGGACGCGGCGCACACCGAATGTGT
LOC_Os06g27590
OsAffx.15629.1.S1_at--64--7491Chr06:15611078..15611102 (25 bp)
GTGTGGAATCACGACTACAGGAGGT
LOC_Os06g27590
Target Sequence 
TGCCGGCGCGGCAACGACAGCCGATGCGGCGACGGGGAATGCAGCGAGGACATTATGTACACTCATAGTCGTAAAGTAGC
TGCGTTTTTTAGATCGTTTAATCCTAGTTATTGGCTTCAAAGAGAAGGAAGTAGCAAGGAATGGATAAGGTGGCACTGTG
TCGGCACAGTGGCGAAGCGGAGGGCGTGGGCGGCGTGGACGCGGCGCACACCGAATGTGTGGAATCACGACTACAGGAGG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis