Browse Element(s) Details


OsAffx.15645.1.S1_at

Description tigr:9634.m02717
TID=OsAffx.15645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2843011/11hypothetical protein
LOC_Os03g417801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28390NANA6+16149734..16156327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28400NANA6+16159253..16159966retrotransposon, putative, centromere-specific
LOC_Os06g28410NANA6+16161417..16163522retrotransposon, putative, centromere-specific
LOC_Os06g28420OsAffx.27848.1.S1_at11/116+16167795..16168594hypothetical protein
LOC_Os06g28430OsAffx.15645.1.S1_at11/116+16176381..16177461hypothetical protein
LOC_Os06g28440NANA6+16177851..16178333retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28450OsAffx.1196.1.S1_x_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28450OsAffx.1196.1.S1_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28460OsAffx.10528.1.S1_x_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28460Os.10959.1.S2_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28470OsAffx.27849.1.S1_at10/116+16194181..16194515hypothetical protein
LOC_Os06g28480Os.51853.1.S1_at11/116+16197180..16199062Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15645.1.S1_at--941--5871Chr06:16176501..16176525 (25 bp)
GAGCCGCCATCCATTCAGAATGAAG
LOC_Os06g28430
OsAffx.15645.1.S1_at--816--3411Chr06:16176531..16176555 (25 bp)
CAGACTTCGGATTGTGCTCCAATTT
LOC_Os06g28430
OsAffx.15645.1.S1_at--119--5491Chr06:16176651..16176675 (25 bp)
GAACTTGCATTCCTAAGACAAACTG
LOC_Os06g28430
OsAffx.15645.1.S1_at--1030--2551Chr06:16176671..16176695 (25 bp)
AACTGTCTGGGACGTTACATCCATA
LOC_Os06g28430
OsAffx.15645.1.S1_at--1000--5371Chr06:16177120..16177141 (22 bp)
GAAGCAAGGTTTGCCTCGACCGACT
LOC_Os06g28430
OsAffx.15645.1.S1_at--1085--1151Chr06:16177170..16177194 (25 bp)
AGTAACGGAAGTTCTCTCTCACGAG
LOC_Os06g28430
OsAffx.15645.1.S1_at--563--1632Chr06:16177245..16177269 (25 bp)
AGCGGAACCCAGTGAGACTCTCGAG
LOC_Os06g28430
OsAffx.15645.1.S1_at--15--3471Chr06:16177254..16177278 (25 bp)
CAGTGAGACTCTCGAGCTTCCAATC
LOC_Os06g28430
OsAffx.15645.1.S1_at--634--51Chr06:16177303..16177327 (25 bp)
ATTGCGCTGAAACCTCTGCCTCAAG
LOC_Os06g28430
OsAffx.15645.1.S1_at--648--1931Chr06:16177349..16177373 (25 bp)
ACGGCAATAAGGAAGCTCATGTCAT
LOC_Os06g28430
OsAffx.15645.1.S1_at--287--5711Chr06:16177401..16177425 (25 bp)
GACTCAACGTCTTCTAGCTGTGTTA
LOC_Os06g28430
Target Sequence 
GAGCCGCCATCCATTCAGAATGAAGAAATTCAGACTTCGGATTGTGCTCCAATTTTATTCAGGGATGGCCTTGATGAAGA
CTACGGCAACACCCTGAATTATTTCAGTAAAAAGATGCTGATTGTTCCTTTGCCACCTCCCGATCCTATGGAACTTGCAT
TCCTAAGACAAACTGTCTGGGACGTTACATCCATAATGAGTGACGAACGGCTAAGGGAGGCAGAGCTTTCATCCGAAGCA
AGGTTTGCCTCGACCGACTCTCTCCCAGAAGATGAGTATGTGGTGGAAGTAACGGAAGTTCTCTCTCACGAGTCTCCTGA
GACCCTTCTGGAAAATGAAGTCCCTAACTTCATAAAAGAGGAAGCGGAACCCAGTGAGACTCTCGAGCTTCCAATCATAG
AACCGCCGCCTCGACCTCCGATTGCGCTGAAACCTCTGCCTCAAGGCCTACGCTATGCTTTCCTGCACGGCAATAAGGAA
GCTCATGTCATCATAAGTAACAAGCTTTCTGAAGATGAGACTCAACGTCTTCTAGCTGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis