Browse Element(s) Details

OsAffx.15701.1.S1_x_at

Description

tigr:9634.m03040
TID=OsAffx.15701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32500	10/11	retrotransposon protein, putative, Ty3-gypsy subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32470	NA	NA	6	+	18876374..18881847	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g32480	OsAffx.15700.1.S1_at	10/11	6	+	18883969..18884330	hypothetical protein
LOC_Os06g32490	Os.45173.1.S1_x_at	4/11	6	+	18889330..18895862	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500	OsAffx.15701.1.S1_x_at	10/11	6	+	18901859..18906748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500	OsAffx.514.1.S1_at	1/11	6	+	18901859..18906748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32510	OsAffx.15702.1.S1_at	11/11	6	+	18908090..18909462	hypothetical protein
LOC_Os06g32520	OsAffx.28610.3.S1_at	1/11	6	+	18915542..18915904	hypothetical protein
LOC_Os06g32520	OsAffx.28610.1.S1_x_at	1/11	6	+	18915542..18915904	hypothetical protein
LOC_Os06g32530	OsAffx.20725.4.S1_x_at	1/11	6	+	18923140..18926352	transposon protein, putative, unclassified
LOC_Os06g32530	OsAffx.20725.3.S1_x_at	1/11	6	+	18923140..18926352	transposon protein, putative, unclassified
LOC_Os06g32530	OsAffx.20725.1.S1_x_at	1/11	6	+	18923140..18926352	transposon protein, putative, unclassified
LOC_Os06g32540	OsAffx.15703.1.S1_x_at	11/11	6	+	18927460..18927889	hypothetical protein
LOC_Os06g32540	OsAffx.15703.1.S1_at	11/11	6	+	18927460..18927889	hypothetical protein
LOC_Os06g32540	OsAffx.18934.1.S1_x_at	2/11	6	+	18927460..18927889	hypothetical protein
LOC_Os06g32550	Os.23224.1.S1_s_at	4/11	6	+	18929753..18930413	Plant thionin family protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15701.1.S1_x_at--982--337	1	NONE	CAGGAGGGTGGGTCGGGATCCGGTG	NONE
OsAffx.15701.1.S1_x_at--683--469	1	Chr06:18901967..18901991 (25 bp)	GCGGCGGCTGCCACAATGACAACGA	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--720--835	1	Chr06:18901969..18901993 (25 bp)	GGCGGCTGCCACAATGACAACGATG	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--838--469	1	Chr06:18901970..18901994 (25 bp)	GCGGCTGCCACAATGACAACGATGT	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--946--439	1	Chr06:18901976..18902000 (25 bp)	GCCACAATGACAACGATGTCTACCG	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--327--221	1	Chr06:18901985..18902009 (25 bp)	ACAACGATGTCTACCGCGCCGAGGA	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--363--451	1	Chr06:18902002..18902026 (25 bp)	GCCGAGGACGGCAACCACGATAACG	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--1125--617	1	Chr06:18902005..18902029 (25 bp)	GAGGACGGCAACCACGATAACGATG	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--262--575	1	Chr06:18902008..18902032 (25 bp)	GACGGCAACCACGATAACGATGGCA	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--297--171	1	Chr06:18902015..18902039 (25 bp)	ACCACGATAACGATGGCAAGGCTAT	LOC_Os06g32500
OsAffx.15701.1.S1_x_at--724--403	1	Chr06:18902019..18902043 (25 bp)	CGATAACGATGGCAAGGCTATTCCA	LOC_Os06g32500

Target Sequence

CAGGAGGGTGGGTCGGGATCCGGTGGCGGCGTTGCTCGGGGCTGTCCTTCACANCCGTGAAGGAGGTGGATCCGGCGGCG
GCTGCCACAATGACAACGATGTCTACCGCGCCGAGGACGGCAACCACGATAACGATGGCAAGGCTATTCCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis