Browse Element(s) Details


OsAffx.15702.1.S1_at

Description tigr:9634.m03042
TID=OsAffx.15702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3251011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32480OsAffx.15700.1.S1_at10/116+18883969..18884330hypothetical protein
LOC_Os06g32490Os.45173.1.S1_x_at4/116+18889330..18895862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500OsAffx.15701.1.S1_x_at10/116+18901859..18906748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500OsAffx.514.1.S1_at1/116+18901859..18906748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32510OsAffx.15702.1.S1_at11/116+18908090..18909462hypothetical protein
LOC_Os06g32520OsAffx.28610.3.S1_at1/116+18915542..18915904hypothetical protein
LOC_Os06g32520OsAffx.28610.1.S1_x_at1/116+18915542..18915904hypothetical protein
LOC_Os06g32530OsAffx.20725.4.S1_x_at1/116+18923140..18926352transposon protein, putative, unclassified
LOC_Os06g32530OsAffx.20725.3.S1_x_at1/116+18923140..18926352transposon protein, putative, unclassified
LOC_Os06g32530OsAffx.20725.1.S1_x_at1/116+18923140..18926352transposon protein, putative, unclassified
LOC_Os06g32540OsAffx.15703.1.S1_x_at11/116+18927460..18927889hypothetical protein
LOC_Os06g32540OsAffx.15703.1.S1_at11/116+18927460..18927889hypothetical protein
LOC_Os06g32540OsAffx.18934.1.S1_x_at2/116+18927460..18927889hypothetical protein
LOC_Os06g32550Os.23224.1.S1_s_at4/116+18929753..18930413Plant thionin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15702.1.S1_at--1007--2951Chr06:18908430..18908454 (25 bp)
AATGTGCTGGAATCGTTCTCCGACG
LOC_Os06g32510
OsAffx.15702.1.S1_at--322--6171Chr06:18908466..18908490 (25 bp)
GAGGAGCTTTTCATAGACGTGTTCA
LOC_Os06g32510
OsAffx.15702.1.S1_at--733--171Chr06:18908547..18908571 (25 bp)
ATTTTCATTCCGACTTCCATATCAG
LOC_Os06g32510
OsAffx.15702.1.S1_at--794--2531Chr06:18909024..18909048 (25 bp)
AACTACACTTTGCTCGGAACACTGG
LOC_Os06g32510
OsAffx.15702.1.S1_at--455--8171Chr06:18909039..18909063 (25 bp)
GGAACACTGGTAAGCGACCACCATG
LOC_Os06g32510
OsAffx.15702.1.S1_at--688--5811Chr06:18909054..18909078 (25 bp)
GACCACCATGGTGCGTTGGCCAAAC
LOC_Os06g32510
OsAffx.15702.1.S1_at--936--331Chr06:18909177..18909201 (25 bp)
ATACAAATTTGCTCCATCGACTGCG
LOC_Os06g32510
OsAffx.15702.1.S1_at--288--5731Chr06:18909195..18909219 (25 bp)
GACTGCGCCTTCTATATCATGCGGT
LOC_Os06g32510
OsAffx.15702.1.S1_at--886--4891Chr06:18909228..18909252 (25 bp)
GCTTACGACGGCAACATGGAATCCA
LOC_Os06g32510
OsAffx.15702.1.S1_at--819--5251Chr06:18909246..18909270 (25 bp)
GAATCCATCGAGAATCTTTCCATCC
LOC_Os06g32510
OsAffx.15702.1.S1_at--223--1971Chr06:18909377..18909401 (25 bp)
ACTCGGTGATTGTCCGGTCAAGCAC
LOC_Os06g32510
Target Sequence 
AATGTGCTGGAATCGTTCTCCGACGGGAGCCTGACAGAGGAGCTTTTCATAGACGTGTTCAGCTCGATTCTATTCAAGGA
TGACATGAAGTACAGGCTAGATAATTATGGAAAAAGGATTTTCATTCCGACTTCCATATCAGTAACGCTGGTTGACATAA
TGGATACAAACAACTACACTTTGCTCGGAACACTGGTAAGCGACCACCATGGTGCGTTGGCCAAACGCATCGTCAAGCGT
CTGAGCGATGCGCTGCAGGCGGTAGTGCCGAAGAGCTTCTGCAGGTTCGGCGGCTTTAGGAAGAACATGATGGAGTGCCC
AAAAATACAAATTTGCTCCATCGACTGCGCCTTCTATATCATGCGGTTCATGGAGGCTTACGACGGCAACATGGAATCCA
TCGAGAATCTTTCCATCCCGACTGACTCGGTGATTGTCCGGTCAAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis