Browse Element(s) Details


OsAffx.15737.1.S1_at

Description tigr:9634.m03256
TID=OsAffx.15737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3441011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34360OsAffx.5001.1.S1_at7/116+19999030..19999818Zinc finger, C3HC4 type family protein
LOC_Os06g34370NANA6+20005381..20006739transposon protein, putative, Pong sub-class
LOC_Os06g34380OsAffx.11235.1.S1_at1/116+20007349..20008578transposon protein, putative, Pong sub-class
LOC_Os06g34390Os.50309.1.S1_at11/116+20009531..20011039Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34400OsAffx.15738.1.S1_at10/116+20018208..20020124Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34410OsAffx.15737.1.S1_at11/116+20024004..20024330hypothetical protein
LOC_Os06g34420OsAffx.15736.1.S1_at11/116+20024975..20030158DEAD/DEAH box helicase family protein
LOC_Os06g34430Os.56371.1.S1_at10/116+20032289..20033346Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15737.1.S1_at--744--4871Chr06:20024272..20024296 (25 bp)
GTTCGGCGGCTTTGGTAGGCCAGGA
LOC_Os06g34410
OsAffx.15737.1.S1_at--653--10831Chr06:20024246..20024270 (25 bp)
TTGGGCATCGGCGTGGCTCAAAGCA
LOC_Os06g34410
OsAffx.15737.1.S1_at--445--3551Chr06:20024241..20024265 (25 bp)
CATCGGCGTGGCTCAAAGCAGAGAC
LOC_Os06g34410
OsAffx.15737.1.S1_at--944--7531Chr06:20024234..20024258 (25 bp)
GTGGCTCAAAGCAGAGACGTCTCCC
LOC_Os06g34410
OsAffx.15737.1.S1_at--884--3271Chr06:20024228..20024252 (25 bp)
CAAAGCAGAGACGTCTCCCAACGAG
LOC_Os06g34410
OsAffx.15737.1.S1_at--839--2891Chr06:20024203..20024227 (25 bp)
AAGGTCAAGCGGCTACGATGGCTGA
LOC_Os06g34410
OsAffx.15737.1.S1_at--435--4371Chr06:20024126..20024189 (25 bp)
GCCACTTGGGTCTGTCGTCATCGGG
LOC_Os06g34410
OsAffx.15737.1.S1_at--281--9811Chr06:20024076..20024100 (25 bp)
TAACGAGGGTACAACGGTGGTGCTA
LOC_Os06g34410
OsAffx.15737.1.S1_at--223--3711Chr06:20024054..20024078 (25 bp)
CTAGCGGTGGTCACAGGGTACTGCA
LOC_Os06g34410
OsAffx.15737.1.S1_at--806--7731Chr06:20024049..20024073 (25 bp)
GGTGGTCACAGGGTACTGCATCGAA
LOC_Os06g34410
OsAffx.15737.1.S1_at--410--2131Chr06:20024042..20024066 (25 bp)
ACAGGGTACTGCATCGAAGAGGAGA
LOC_Os06g34410
Target Sequence 
GTTCGGCGGCTTTGGTAGGCCAGGAGTTGGGCATCGGCGTGGCTCAAAGCAGAGACGTCTCCCAACGAGAAGGTCAAGCG
GCTACGATGGCTGAGGAGGCCACCGTCGCCACTTGGGTCTGTCGTCATCGGGGAAGGTATTCAGCTGAGGAGGGAGCTAA
CGAGGGTACAACGGTGGTGCTAGCGGTGGTCACAGGGTACTGCATCGAAGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis