Browse Element(s) Details


OsAffx.15738.1.S1_at

Description tigr:9634.m03257
TID=OsAffx.15738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3440010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34360OsAffx.5001.1.S1_at7/116+19999030..19999818Zinc finger, C3HC4 type family protein
LOC_Os06g34370NANA6+20005381..20006739transposon protein, putative, Pong sub-class
LOC_Os06g34380OsAffx.11235.1.S1_at1/116+20007349..20008578transposon protein, putative, Pong sub-class
LOC_Os06g34390Os.50309.1.S1_at11/116+20009531..20011039Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34400OsAffx.15738.1.S1_at10/116+20018208..20020124Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34410OsAffx.15737.1.S1_at11/116+20024004..20024330hypothetical protein
LOC_Os06g34420OsAffx.15736.1.S1_at11/116+20024975..20030158DEAD/DEAH box helicase family protein
LOC_Os06g34430Os.56371.1.S1_at10/116+20032289..20033346Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15738.1.S1_at--851--3071Chr06:20019527..20019551 (25 bp)
AATAAATCAGTTCAAATCATCGGAG
LOC_Os06g34400
OsAffx.15738.1.S1_at--871--3291Chr06:20019539..20019563 (25 bp)
CAAATCATCGGAGAAATCGCTGGTC
LOC_Os06g34400
OsAffx.15738.1.S1_at--939--1411Chr06:20019550..20019574 (25 bp)
AGAAATCGCTGGTCGGGATGCCCGA
LOC_Os06g34400
OsAffx.15738.1.S1_at--349--3671Chr06:20019616..20019640 (25 bp)
CGAGGCTAGGGTGCTACGGCTTCAT
LOC_Os06g34400
OsAffx.15738.1.S1_at--241--9091Chr06:20019627..20019651 (25 bp)
TGCTACGGCTTCATGGCGGTGAACG
LOC_Os06g34400
OsAffx.15738.1.S1_at--593--8291Chr06:20019633..20019657 (25 bp)
GGCTTCATGGCGGTGAACGTCCTGA
LOC_Os06g34400
OsAffx.15738.1.S1_at--756--10531Chr06:20019636..20019660 (25 bp)
TTCATGGCGGTGAACGTCCTGATGG
LOC_Os06g34400
OsAffx.15738.1.S1_at--699--7251Chr06:20019651..20019675 (25 bp)
GTCCTGATGGGGCTGTACTGCTCCA
LOC_Os06g34400
OsAffx.15738.1.S1_at--84--8251NONE
GGCAGGCTGGCGCAAACGACGGGAG
NONE
OsAffx.15738.1.S1_at--133--8251Chr06:20019985..20020009 (25 bp)
GGCACCTGTTCCACGAGGACTGCGT
LOC_Os06g34400
OsAffx.15738.1.S1_at--1116--951Chr06:20020000..20020024 (25 bp)
AGGACTGCGTCGACGTGTGGCTGCG
LOC_Os06g34400
Target Sequence 
AATAAATCAGTTCAAATCATCGGAGAAATCGCTGGTCGGGATGCCCGAGGCGGCGGCGGCGGAGGAGGAAGGCGGTGATG
GCTGCTCGACGAGGCTAGGGTGCTACGGCTTCATGGCGGTGAACGTCCTGATGGGGCTGTACTGCTCCATCGCCTACGCC
GTGAGCGCCACCGTGGCGGGCGCCGTCGCCGTCGCGGTCGCGCTCCTCCTGCTGGCGCTCGCCGGCAGGCTGGCGCAAAC
GACGGGAGGAGGCTCCCCCACGGCGGCGGCGTCGGGGCGGCGGCGGCGGCTGCTGAGCTGCCCGTGCGCGTGCGGGCTGA
TGGCGCCCGGCGCGGGGGGGATCGGCGTGCTGCCGGCGTTCGCGTACGAGCCCGGCGGCGGCGGCGGCGGCGTGCTGTGC
GCGGTGTGCCTGGAGGACTTGCGCGGCGGCGAGATGGTGCGGCGGCTGCCGGCGTGCGGGCACCTGTTCCACGAGGACTG
CGTCGACGTGTGGCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis