Browse Element(s) Details


OsAffx.15787.1.S1_at

Description gb:NM_187914.1
DB_XREF= gi:34902911
TID=OsAffx.15787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g367901/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36760OsAffx.7315.1.S1_at11/1111+21204163..21206712hypothetical protein
LOC_Os11g36770OsAffx.31332.1.S1_at11/1111+21210112..21210467hypothetical protein
LOC_Os11g36780OsAffx.19200.1.S1_at9/1111+21215525..21217131hypothetical protein
LOC_Os11g36790OsAffx.15787.2.S1_s_at11/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36790Os.20602.2.S1_x_at8/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36790OsAffx.15787.1.S1_at1/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36800OsAffx.19201.1.S1_at11/1111+21225853..21226323hypothetical protein
LOC_Os11g36800OsAffx.15332.1.S1_s_at2/1111+21225853..21226323hypothetical protein
LOC_Os11g36810OsAffx.7317.1.S1_s_at10/1111+21226929..21227892hypothetical protein
LOC_Os11g36820OsAffx.31333.1.S1_at11/1111+21228640..21229266hypothetical protein
LOC_Os11g36830Os.53491.1.S1_at11/1111+21229554..21231664expressed protein
LOC_Os11g36840OsAffx.31334.1.S1_at11/1111+21232860..21234826expressed protein
LOC_Os11g36850NANA11+21238490..21239782retrotransposon protein, putative, unclassified
LOC_Os11g36860NANA11+21240290..21243225retrotransposon protein, putative, unclassified
LOC_Os11g36870NANA11+21244733..21249981retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15787.1.S1_at--562--68358Chr12:26650324..26650348 (25 bp)
GTTTCATCAGCCGTGCCTAACGGGC
NONE
OsAffx.15787.1.S1_at--1146--10211Chr01:8546534..8546558 (25 bp)
TTTGGACACCTATAGGTCTCGCCGA
NONE
OsAffx.15787.1.S1_at--112--1712Chr11:17543772..17543964 (25 bp)
ACCCGTTGTACTTGCCCTTAATATG
NONE
OsAffx.15787.1.S1_at--1111--871Chr01:8546308..8546329 (22 bp)
ATGGCCAGCTGCACAGGTTGAGAAA
NONE
OsAffx.15787.1.S1_at--516--7971Chr01:8546096..8546120 (25 bp)
GGATCTGCGACGAAGCCGCGACGAC
NONE
OsAffx.15787.1.S1_at--791--7553Chr12:27323875..27323899 (25 bp)
GGGCCTCAAAAGATGTGCACTCCGC
NONE
OsAffx.15787.1.S1_at--553--10752Chr07:832874..832893 (20 bp)
TTGACAAACCGTTGATCCCCATCGG
NONE
OsAffx.15787.1.S1_at--366--4375Chr01:11296836..11296855 (20 bp)
CCACGGAAACGGCACAAGACTGAGT
NONE
OsAffx.15787.1.S1_at--912--5611Chr01:8543941..8543965 (25 bp)
GACAAACCAGAGACGCTCATCATCA
NONE
OsAffx.15787.1.S1_at--63--411Chr01:8543920..8543944 (25 bp)
ATCATCGGTTTACTCACGTTGGCGT
NONE
OsAffx.15787.1.S1_at--419--2371Chr01:8543871..8543895 (25 bp)
AAACCGCTGCATAGCCAGACCACGA
NONE
Target Sequence 
GTTTCATCAGCCGTGCCTAACGGGCCGTGCCGGAACCGTGCCCGTGCCGGAACCGTGCCCGTGCCGGGCCGGGCCGTGCC
GCCCGTTTGGACACCTATAGGTCTCGCCGACCCGTTGTACTTGCCCTTAATATGGCCAGCTGCACAGGTTGAGAAAAATG
AGCAAGTCGGCAGGGATCTGCGACGAAGCCGCGACGACCGCTACCCTGGGCCTCAAAAGATGTGCACTCCGCTTGACAAA
CCGTTGATCCCCATCGGCTGCCTCCACGGAAACGGCACAAGACTGAGTGGACAAAGACAAACCAGAGACGCTCATCATCA
TCGGTTTACTCACGTTGGCGTGGTGGACCACGTCCACCGACCCGCAAACCGCTGCATAGCCAGACCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis