Browse Element(s) Details


OsAffx.15810.1.S1_at

Description tigr:9634.m03626
TID=OsAffx.15810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor protein kinase zmpk1 precursor (ec 2.7.1.37). (maize, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3810010/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38070Os.46306.1.S1_x_at3/116+22509716..22513920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38080Os.5809.1.S1_s_at2/116+22521478..22524610hypothetical protein
LOC_Os06g38080Os.54953.1.S1_at1/116+22521478..22524610hypothetical protein
LOC_Os06g38090OsAffx.15809.1.S1_at11/116+22525690..22534533hypothetical protein
LOC_Os06g38090OsAffx.29062.1.S1_at1/116+22525690..22534533hypothetical protein
LOC_Os06g38100OsAffx.15810.1.S1_at10/116+22535603..22537238Protein kinase domain containing protein
LOC_Os06g38100OsAffx.23090.9.S1_x_at1/116+22535603..22537238Protein kinase domain containing protein
LOC_Os06g38110OsAffx.5041.1.S1_s_at11/116+22549998..22550883expressed protein
LOC_Os06g38110OsAffx.5041.1.S1_at10/116+22549998..22550883expressed protein
LOC_Os06g38110Os.40406.1.A1_at7/116+22549998..22550883expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15810.1.S1_at--532--3491Chr06:22535701..22535725 (25 bp)
CAGGCTGTATAGTCTAATGAATGAT
LOC_Os06g38100
OsAffx.15810.1.S1_at--782--8151NONE
GGAACATGGATACTGGTTTCAGAAT
NONE
OsAffx.15810.1.S1_at--654--311Chr06:22536686..22536710 (25 bp)
ATACGTGGACAATGACTCGTTGGAT
LOC_Os06g38100
OsAffx.15810.1.S1_at--355--8591Chr06:22536725..22536749 (25 bp)
TGGTCAGGGATCACAGGCATTACTT
LOC_Os06g38100
OsAffx.15810.1.S1_at--637--6451Chr06:22536733..22536757 (25 bp)
GATCACAGGCATTACTTGAATGGAA
LOC_Os06g38100
OsAffx.15810.1.S1_at--729--6131Chr06:22536922..22536946 (25 bp)
GAGGTGGATCTAATTTAAATGTGTC
LOC_Os06g38100
OsAffx.15810.1.S1_at--602--10331Chr06:22536935..22536959 (25 bp)
TTTAAATGTGTCGAGGATCCAAGGA
LOC_Os06g38100
OsAffx.15810.1.S1_at--578--9591Chr06:22537123..22537147 (25 bp)
TCATTAGGATGCTAGCGGAGAATTC
LOC_Os06g38100
OsAffx.15810.1.S1_at--737--4851Chr06:22537133..22537157 (25 bp)
GCTAGCGGAGAATTCGAAGTCTGAT
LOC_Os06g38100
OsAffx.15810.1.S1_at--351--7991Chr06:22537160..22537184 (25 bp)
GGATGAACAATCATGGATTCCAGAC
LOC_Os06g38100
OsAffx.15810.1.S1_at--236--7931Chr06:22537174..22537198 (25 bp)
GGATTCCAGACTTCATTGACTTCAG
LOC_Os06g38100
Target Sequence 
CAGGCTGTATAGTCTAATGAATGATGGAACATGGATACTGGTTTCAGAATACGTGGACAATGACTCGTTGGATAAAATAT
TGTTTGGTGGTCAGGGATCACAGGCATTACTTGAATGGAAGCAAAGATTTAACATTGCTCTAGAGGTCGCTAAGGGGTTG
GCGTATCTTCATCATGAGTGCTTGGAGTGGGTCATCCATTGTGATGTAAAACCAGAAAATATACTGCTGGATGAGAATTT
GGAGCCAAAGATTGCTGACTTTGGCCTTGCAAAGCTGCTAAATAGAGGTGGATCTAATTTAAATGTGTCGAGGATCCAAG
GAACTAGAGGCTATTTAGCGTCTGAATGGGTTTCTAGTCTTCCGATAACAGCAAAGGTTGATGTGTACAGCTTTGGAGTG
GTGCTTCTAGAACTACTAAAAGGAGCTCGTGTTGCTGACCTTGAAACAAACAAAGATGAGGAGGTGGAAATGGTTCTCGG
AAGAATCATTAGGATGCTAGCGGAGAATTCGAAGTCTGATGGGGATGAACAATCATGGATTCCAGACTTCATTGACTTCA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis