Browse Element(s) Details


OsAffx.15830.1.S1_at

Description tigr:9634.m03725
TID=OsAffx.15830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3901011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38970OsAffx.5056.1.S1_x_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.12667.1.S1_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.13590.1.S1_x_at1/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38980Os.51905.1.S1_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38980OsAffx.5057.1.S1_s_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38990Os.51310.1.S1_at11/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990Os.55583.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990OsAffx.4190.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g39000OsAffx.15829.1.S1_at11/116+23155212..23155634hypothetical protein
LOC_Os06g39010OsAffx.15830.1.S1_at11/116+23156564..23157463hypothetical protein
LOC_Os06g39020NANA6+23164710..23169275retrotransposon protein, putative, unclassified
LOC_Os06g39030OsAffx.28000.1.A1_at11/116+23171472..23172146hypothetical protein
LOC_Os06g39040OsAffx.28001.1.S1_s_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39040OsAffx.28001.1.S1_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15830.1.S1_at--877--7111Chr06:23156618..23156642 (25 bp)
GTCAGTGGAGCCGACCACCAAAAAT
LOC_Os06g39010
OsAffx.15830.1.S1_at--480--5771Chr06:23156630..23156654 (25 bp)
GACCACCAAAAATCGTGCGGCAGTA
LOC_Os06g39010
OsAffx.15830.1.S1_at--571--7631Chr06:23156661..23156685 (25 bp)
GGGACTATAGTGATTCCCTCCTTTT
LOC_Os06g39010
OsAffx.15830.1.S1_at--813--9291Chr06:23156675..23156699 (25 bp)
TCCCTCCTTTTCGTGGATCCAAGAA
LOC_Os06g39010
OsAffx.15830.1.S1_at--383--571Chr06:23156691..23156715 (25 bp)
ATCCAAGAAGCACGACGGATCTGCT
LOC_Os06g39010
OsAffx.15830.1.S1_at--489--1931Chr06:23156705..23156729 (25 bp)
ACGGATCTGCTGGAGGTTGCTGATT
LOC_Os06g39010
OsAffx.15830.1.S1_at--1133--10831Chr06:23156728..23156752 (25 bp)
TTGGGCCAAGGCATGGATGCATCCT
LOC_Os06g39010
OsAffx.15830.1.S1_at--70--6331Chr06:23156743..23156767 (25 bp)
GATGCATCCTAAGGGCAACCAGGGA
LOC_Os06g39010
OsAffx.15830.1.S1_at--793--1031Chr06:23156773..23156797 (25 bp)
AGGTGACAGCTCGATGTGGCAAGAA
LOC_Os06g39010
OsAffx.15830.1.S1_at--832--2391Chr06:23157360..23157384 (25 bp)
AAACTATAGATGCTGCTCACCGCAA
LOC_Os06g39010
OsAffx.15830.1.S1_at--463--4771Chr06:23157371..23157395 (25 bp)
GCTGCTCACCGCAAGGCTGTTGGGT
LOC_Os06g39010
Target Sequence 
GTCAGTGGAGCCGACCACCAAAAATCGTGCGGCAGTAAGGATGGGGACTATAGTGATTCCCTCCTTTTCGTGGATCCAAG
AAGCACGACGGATCTGCTGGAGGTTGCTGATTGGGCCAAGGCATGGATGCATCCTAAGGGCAACCAGGGACGTGGAGGTG
ACAGCTCGATGTGGCAAGAAAGGCGGTGTTGGTGTAGGGAGACTGCAGGAGTTGGTGTGGGGGATGGCTGCACGGGGTGG
CCTAAAACTATAGATGCTGCTCACCGCAAGGCTGTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis