Browse Element(s) Details


OsAffx.1585.1.S1_at

Description gb:NM_185383.1
DB_XREF= gi:34897851
GEN=OSJNBa0004I20.24
TID=OsAffx.1585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0004I20.24 (OSJNBa0004I20.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g140602/11retrotransposon protein, putative, unclassified
LOC_Os08g292301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14030NANA5+7816536..7816910hypothetical protein
LOC_Os05g14034Os.16349.1.S1_at10/115+7824648..7825593expressed protein
LOC_Os05g14040OsAffx.26875.1.S1_at7/115+7829161..7829576D111/G-patch domain-containing protein, putative
LOC_Os05g14050NANA5+7832249..7834826hypothetical protein
LOC_Os05g14060OsAffx.11259.1.S1_at3/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.1585.1.S1_at2/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.22850.1.S1_x_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.17107.1.S1_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14070OsAffx.14680.1.S1_at11/115+7842128..7843086hypothetical protein
LOC_Os05g14080OsAffx.14681.1.S1_at11/115+7843586..7845054hypothetical protein
LOC_Os05g14090OsAffx.13127.1.S1_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.13127.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.22699.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14100Os.31845.1.S1_x_at1/115+7853969..7856906hypothetical protein
LOC_Os05g14110NANA5+7861728..7868119transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1585.1.S1_at--1120--8051Chr06:601889..601913 (25 bp)
GGAGACGGCGCGAGCCACATCCGCT
NONE
OsAffx.1585.1.S1_at--1--1631Chr06:602030..602054 (25 bp)
AGCGTCGAATTACTCCGGTCAGCTG
NONE
OsAffx.1585.1.S1_at--17--4211Chr06:602246..602270 (25 bp)
CCCCTGCTGACGTTACTACAAGAAG
NONE
OsAffx.1585.1.S1_at--620--6171Chr06:602284..602420 (25 bp)
GAGGAGGCACCAGCGTCAGCACCTT
NONE
OsAffx.1585.1.S1_at--645--6611Chr06:602450..602474 (25 bp)
GTTGGCTCCGTCGATCCAGAGAAGG
NONE
OsAffx.1585.1.S1_at--435--8273Chr08:17791250..17791273 (24 bp)
GGCATCGACAGGCAAGCCTCCAAAC
LOC_Os08g29230
OsAffx.1585.1.S1_at--634--7551Chr06:604529..604553 (25 bp)
GGGCCAAGCATCCAAAACCTCCGGG
NONE
OsAffx.1585.1.S1_at--618--7632Chr06:604552..604576 (25 bp)
GGGACCAATCAATCATCATCTGAGG
NONE
OsAffx.1585.1.S1_at--365--9591Chr06:604567..604591 (25 bp)
TCATCTGAGGTTGAGACTGGGAACA
NONE
OsAffx.1585.1.S1_at--434--8171Chr06:604586..604610 (25 bp)
GGAACATCGTCCCAGTCACCATAGA
NONE
OsAffx.1585.1.S1_at--1155--1091Chr06:604644..604668 (25 bp)
AGTGATGAAGAGTGCTCAGCAGCAA
NONE
Target Sequence 
GGAGACGGCGCGAGCCACATCCGCTGCCCCTGCTCCTCGCCGCCGACCTTGCTCGGCAAATCCGGCACCCCACCGAGCGG
GGTGAGAGGGCGGGAGAGAGAAAGCGGAGGCATTGGGGAGATGAAGAGTATGGCGCCGACCAGCGTCGAATTACTCCGGT
CAGCTGGATCCGCTGGCGAGGAGGTCGAGCTCGCTGGATCCGGTGGCCCTAGCCTCCTGACAGGCCCCGATGGGCACCGC
GTCCGCCCTCCCCCTGCTGACGTTACTACAAGAAGAGGAATAAGGAGGGAGGAGGCACCAGCGTCAGCACCTTCAACCAC
CGCCACCGCCATTACTACCCCTGTTGGCTCCGTCGATCCAGAGAAGGGAAGAGAAAAACAATCACCGGCATCGACAGGCA
AGCCTCCAAACCCTCCGGGGGCCAAGCATCCAAAACCTCCGGGGACCAATCAATCATCATCTGAGGTTGAGACTGGGAAC
ATCGTCCCAGTCACCATAGACAAGTTATCACCAGAACAGAAGGAGTTTAAGCAAGTGATGAAGAGTGCTCAGCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis