Browse Element(s) Details


OsAffx.15937.1.S1_at

Description tigr:9634.m04412
TID=OsAffx.15937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4542011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45380OsAffx.28116.1.S1_s_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380OsAffx.28116.1.S1_x_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.17353.1.S1_at10/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.20764.1.S1_s_at1/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390OsAffx.15936.1.S1_at10/116+27440488..27443852expressed protein
LOC_Os06g45399NANA6+27445969..27446559NA
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein
LOC_Os06g45430Os.4719.1.S1_at11/116+27465368..27468861LEM3 family/CDC50 family protein, expressed
LOC_Os06g45440Os.17920.1.S1_at11/116+27468979..27470808haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os06g45450OsAffx.28117.1.S1_at11/116+27472218..27473452hypothetical protein
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15937.1.S1_at--109--9631Chr06:27461138..27461336 (25 bp)
TCAGGCACGAATTCAGACCGCAACG
LOC_Os06g45420
OsAffx.15937.1.S1_at--797--5211Chr06:27461146..27461344 (25 bp)
GAATTCAGACCGCAACGTGCATGTG
LOC_Os06g45420
OsAffx.15937.1.S1_at--704--10531Chr06:27461149..27461347 (25 bp)
TTCAGACCGCAACGTGCATGTGAAT
LOC_Os06g45420
OsAffx.15937.1.S1_at--365--1391Chr06:27461329..27461350 (22 bp)
AGACCGCAACGTGCATGTGAATGGG
LOC_Os06g45420
OsAffx.15937.1.S1_at--134--8271Chr06:27461350..27461374 (25 bp)
GGCAGATAAGAAGGCCCAGAGCCAA
LOC_Os06g45420
OsAffx.15937.1.S1_at--355--351Chr06:27461355..27461379 (25 bp)
ATAAGAAGGCCCAGAGCCAAGAACA
LOC_Os06g45420
OsAffx.15937.1.S1_at--1140--8251Chr06:27461870..27461894 (25 bp)
GGCAGAAAAGCACCTCCAGATGAGG
LOC_Os06g45420
OsAffx.15937.1.S1_at--256--6211Chr06:27461898..27461922 (25 bp)
GAGGCCCAGGAGAAATACATGCGGT
LOC_Os06g45420
OsAffx.15937.1.S1_at--1161--2251Chr06:27461910..27461934 (25 bp)
AAATACATGCGGTCCATGATGGAGA
LOC_Os06g45420
OsAffx.15937.1.S1_at--944--591Chr06:27461916..27461940 (25 bp)
ATGCGGTCCATGATGGAGAAAGCAC
LOC_Os06g45420
OsAffx.15937.1.S1_at--529--2671Chr06:27461944..27461968 (25 bp)
AAGCCCTCGCATCTGGTGCCACGTG
LOC_Os06g45420
Target Sequence 
TCAGGCACGAATTCAGACCGCAACGTGCATGTGAATGGGGCAGATAAGAAGGCCCAGAGCCAAGAACAACAAGAGGCAGA
AAAGCACCTCCAGATGAGGGTTGAGGCCCAGGAGAAATACATGCGGTCCATGATGGAGAAAGCACACCAAGCCCTCGCAT
CTGGTGCCACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis