Browse Element(s) Details


OsAffx.15992.1.S1_at

Description tigr:9634.m04782
TID=OsAffx.15992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=delta-aminolevulinic acid dehydratase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4911011/11Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49060Os.54378.1.S1_at11/116+29732807..29736190ternary complex factor MIP1, putative, expressed
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein
LOC_Os06g49080Os.54886.1.S1_at11/116+29737882..29741501Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090Os.8048.1.S1_at11/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090Os.54886.1.S1_at2/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100OsAffx.28180.1.S1_s_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_x_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004655molecular_functionporphobilinogen synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15992.1.S1_at--655--7331Chr06:29756524..29756548 (25 bp)
GTGCATCTCATTCTCTATCTGGATT
LOC_Os06g49110
OsAffx.15992.1.S1_at--645--891Chr06:29756477..29756501 (25 bp)
AGGCAGGTTGTGGAACTACGGTACA
LOC_Os06g49110
OsAffx.15992.1.S1_at--128--851Chr06:29756452..29756476 (25 bp)
ACCGGAAGAATCTCAAACTGCCCAC
LOC_Os06g49110
OsAffx.15992.1.S1_at--460--2551Chr06:29756437..29756461 (25 bp)
AACTGCCCACCTGAGCAATTTTGTA
LOC_Os06g49110
OsAffx.15992.1.S1_at--921--931Chr06:29756324..29756348 (25 bp)
AGGCACAAGCCCCAACAGTAGATCA
LOC_Os06g49110
OsAffx.15992.1.S1_at--553--2611Chr06:29756278..29756302 (25 bp)
AACGCCATTGATTCAGATCTCAAGC
LOC_Os06g49110
OsAffx.15992.1.S1_at--198--1331Chr06:29756242..29756266 (25 bp)
AGAGGTAAACCAAGCTCTCTGACCT
LOC_Os06g49110
OsAffx.15992.1.S1_at--269--9751Chr06:29756199..29756223 (25 bp)
TAATTAATCAGCAGCGACCAGCGCG
LOC_Os06g49110
OsAffx.15992.1.S1_at--241--4571Chr06:29756146..29756170 (25 bp)
GCGAAATGGTAATGGCCGGCAGCCT
LOC_Os06g49110
OsAffx.15992.1.S1_at--266--4491Chr06:29756132..29756156 (25 bp)
GCCGGCAGCCTGAGCAATGAGAAAT
LOC_Os06g49110
OsAffx.15992.1.S1_at--441--8271Chr06:29756094..29756118 (25 bp)
GGCATTGCACTTTGCAGCGAACATG
LOC_Os06g49110
Target Sequence 
GTGCATCTCATTCTCTATCTGGATTCTGAAACAAAGTAATCAAGCACAGGCAGGTTGTGGAACTACGGTACAACCGGAAG
AATCTCAAACTGCCCACCTGAGCAATTTTGTACTACTAATGAGTGTAAGCTACTGGTATTAAGTAATCTTAGGGGCTAGT
GAACAGATGATGATGATGATGATGCAAGTGCAAGAAACACAGGCACAAGCCCCAACAGTAGATCACAATGATACATGAGC
AGAAAAAACGCCATTGATTCAGATCTCAAGCCACACACACACAGAGGTAAACCAAGCTCTCTGACCTCTCAAACAATCAA
CCCTCTAATTAATCAGCAGCGACCAGCGCGGCTCTGCGTCAGCTGTCGCGCTGGTTTGGCGAAATGGTAATGGCCGGCAG
CCTGAGCAATGAGAAATATCAAAGATCAATGGCATTGCACTTTGCAGCGAACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis