Browse Element(s) Details


OsAffx.16007.1.S1_at

Description tigr:9634.m04910
TID=OsAffx.16007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=thaumatin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5024010/11Thaumatin protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50200NANA6+30396269..30399164retrotransposon protein, putative, unclassified, expressed
LOC_Os06g50210OsAffx.5157.1.S1_at11/116+30400328..30402076hypothetical protein
LOC_Os06g50220Os.15039.1.S1_at11/116+30407670..30413526expressed protein
LOC_Os06g50230Os.4999.1.S1_at11/116+30416663..30417847expressed protein
LOC_Os06g50240OsAffx.16007.1.S1_at10/116+30419080..30420779Thaumatin protein, putative
LOC_Os06g50250OsAffx.28197.1.S1_at11/116+30421609..30422507hypothetical protein
LOC_Os06g50260OsAffx.21897.5.S1_x_at6/116+30423968..30426909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50270NANA6+30427226..30433336retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50280OsAffx.28198.1.S1_at11/116+30433756..30436762F-box domain containing protein
LOC_Os06g50290NANA6+30438406..30442234transposon protein, putative, Pong sub-class
LOC_Os06g50300Os.12393.1.S1_at11/116+30443413..30449445Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50300Os.12393.1.S2_a_at11/116+30443413..30449445Endoplasmin homolog precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16007.1.S1_at--943--7031Chr06:30419691..30419715 (25 bp)
GTACAACCTGCCGATGCTTGTGGCG
LOC_Os06g50240
OsAffx.16007.1.S1_at--736--7071Chr06:30419753..30419777 (25 bp)
GTAATAACGGGAGCAGCTGCCAGGT
LOC_Os06g50240
OsAffx.16007.1.S1_at--556--831Chr06:30419791..30419815 (25 bp)
ATGGACCTGAACAAGTCGTGCCCGG
LOC_Os06g50240
OsAffx.16007.1.S1_at--331--8971Chr06:30419798..30419822 (25 bp)
TGAACAAGTCGTGCCCGGCGGAGCT
LOC_Os06g50240
OsAffx.16007.1.S1_at--456--3931Chr06:30419942..30419966 (25 bp)
CGGCGACGGCGTACTCGAGGTTCTT
LOC_Os06g50240
OsAffx.16007.1.S1_at--989--9371Chr06:30419956..30419980 (25 bp)
TCGAGGTTCTTCAAGGGCGCGTGCC
LOC_Os06g50240
OsAffx.16007.1.S1_at--267--5771Chr06:30420052..30420076 (25 bp)
GACGTCGTCTTCTGCCCCGGCATGT
LOC_Os06g50240
OsAffx.16007.1.S1_at--692--4191NONE
CCCGGCATGTCCAGGAACTCGAATG
NONE
OsAffx.16007.1.S1_at--106--5471Chr06:30420677..30420701 (25 bp)
GAACTCGAATGACAAATCACAACCT
LOC_Os06g50240
OsAffx.16007.1.S1_at--1082--6431Chr06:30420708..30420732 (25 bp)
GATCAGATATTTAATCAAGCCTTGA
LOC_Os06g50240
OsAffx.16007.1.S1_at--231--1691Chr06:30420725..30420749 (25 bp)
AGCCTTGATTAACTTTTTCTCGAGA
LOC_Os06g50240
Target Sequence 
GTACAACCTGCCGATGCTTGTGGCGCCGTCGACGCCGCCGCCGGCGAGCGGCGGCGCGGCGAGTAATAACGGGAGCAGCT
GCCAGGTGACGGGGTGCGTGATGGACCTGAACAAGTCGTGCCCGGCGGAGCTGCAGGTGGTGGCGGCGTCGGCGGCGAGG
AGAGCGGTGGCGGCGTGCAAGAGCGCGTGCGAGGCGTTCGGGACGGCGGAGTACTGCTGCAGCGGCGCGCACGGGTCGCC
GGCGACGTGCGCGGCGACGGCGTACTCGAGGTTCTTCAAGGGCGCGTGCCCGCGAGCCTACAGCTACGCGTACGACGACG
CGACGTCGACGTTCACCTGCGCGGCCGCCGGCGGCGGCTACGACGTCGTCTTCTGCCCCGGCATGTCCAGGAACTCGAAT
GACAAATCACAACCTGAAAATGATCAGATATTTAATCAAGCCTTGATTAACTTTTTCTCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis