Browse Element(s) Details


OsAffx.16061.1.S1_at

Description tigr:9635.m00226
TID=OsAffx.16061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF410311 AT3g18860MCB22_3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0316011/11Phospholipase A-2-activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03140NANA7+1200894..1204643ternary complex factor MIP1, putative, expressed
LOC_Os07g03150OsAffx.16060.1.S1_at11/117+1212157..1216052f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g03160OsAffx.16062.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160OsAffx.16061.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160Os.5896.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03170Os.56093.1.S1_at11/117+1238103..1238925expressed protein
LOC_Os07g03180Os.4624.1.S1_at11/117+1243744..1244547expressed protein
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16061.1.S1_at--579--9871Chr07:1228649..1228673 (25 bp)
TACAGTTACTCATGAACTGCCAGAT
LOC_Os07g03160
OsAffx.16061.1.S1_at--851--8971Chr07:1228637..1228661 (25 bp)
TGAACTGCCAGATGTACTTGCCGAG
LOC_Os07g03160
OsAffx.16061.1.S1_at--625--5191Chr07:1227647..1227671 (25 bp)
GCAATCGGCTCTCTCGTATCCTTCT
LOC_Os07g03160
OsAffx.16061.1.S1_at--509--3771Chr07:1227639..1227663 (25 bp)
CTCTCTCGTATCCTTCTCAATGATA
LOC_Os07g03160
OsAffx.16061.1.S1_at--296--9531Chr07:1227625..1227649 (25 bp)
TCTCAATGATACACAACACAATGCT
LOC_Os07g03160
OsAffx.16061.1.S1_at--726--2193Chr07:1227613..1227637 (25 bp)
ACAACACAATGCTTAGTACTCCCTC
LOC_Os07g03160
OsAffx.16061.1.S1_at--454--9292Chr05:21411136..21411525 (25 bp)
TCCGTTTCACAATTACAAAAATATG
NONE
OsAffx.16061.1.S1_at--131--10111Chr07:1227310..1227334 (25 bp)
TATGTTTTGGCCGTGTTGTCCTTAA
LOC_Os07g03160
OsAffx.16061.1.S1_at--607--8811Chr07:1227297..1227321 (25 bp)
TGTTGTCCTTAACCTTACCCCAGAT
LOC_Os07g03160
OsAffx.16061.1.S1_at--971--10491Chr07:1227289..1227313 (25 bp)
TTAACCTTACCCCAGATGTTGAATG
LOC_Os07g03160
OsAffx.16061.1.S1_at--1035--3651Chr07:1227284..1227308 (25 bp)
CTTACCCCAGATGTTGAATGGCCTT
LOC_Os07g03160
Target Sequence 
TACAGTTACTCATGAACTGCCAGATGTACTTGCCGAGACTTTCCATAAGGTTGTAACGCCACCTGTGCAGCCACCAAATG
TGCTTACAACCCTTAAAGCAGTTACTAACTTATTTGACAAGCCATGCTTGCACCAATGGTTGAGAATCCATGGCATGGAG
ATTATTGATTCAGTATCAAGCTGTAAGACAACTTTTAGCAAGAATGCTCACCTGGCATATTCCACACTTCTACTCAATTA
TGCTGTTCTTTCAATCGAATCAAAGGATGAACAAAGTCAGGCACAGATACTTTCTGCTGCCCTTGAAATCGCTGAAGACG
ACACCCAAGTTGCTGATTCGAAATACCGGGCCCTTGTTGCAATCGGCTCTCTCGTATCCTTCTCAATGATACACAACACA
ATGCTTAGTACTCCCTCCGTTTCACAATTACAAAAATATGTTTTGGCCGTGTTGTCCTTAACCTTACCCCAGATGTTGAA
TGGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis