Browse Element(s) Details


OsAffx.16131.1.S1_at

Description tigr:9635.m00659
TID=OsAffx.16131.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plastocyanin-like domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0717010/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein
LOC_Os07g07140Os.46018.1.S1_x_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07140Os.46018.1.S1_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07150Os.32042.2.S1_x_at11/117+3537843..3540491expressed protein
LOC_Os07g07150Os.32042.1.S1_at9/117+3537843..3540491expressed protein
LOC_Os07g07160OsAffx.28320.1.S1_at11/117+3543079..3544314hypothetical protein
LOC_Os07g07160Os.46018.1.S1_x_at1/117+3543079..3544314hypothetical protein
LOC_Os07g07170OsAffx.16131.1.S1_at10/117+3545801..3546892Plastocyanin-like domain containing protein
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07210OsAffx.28321.1.S1_x_at11/117+3571454..3572054expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16131.1.S1_at--514--3931Chr07:3545856..3545880 (25 bp)
CGGCGATGGTCTCTGCCACGGATTA
LOC_Os07g07170
OsAffx.16131.1.S1_at--577--9191Chr07:3545869..3545893 (25 bp)
TGCCACGGATTACACCGTCGGCGAT
LOC_Os07g07170
OsAffx.16131.1.S1_at--702--8431Chr07:3545894..3545918 (25 bp)
GGCCATGGCTGGACTCTCGAGTACC
LOC_Os07g07170
OsAffx.16131.1.S1_at--79--7571Chr07:3545931..3545955 (25 bp)
GGGCCGACGGCAAATCATTCCAAAT
LOC_Os07g07170
OsAffx.16131.1.S1_at--376--491NONE
ATCGGCGACAAACTAGTGTTCACGT
NONE
OsAffx.16131.1.S1_at--88--7431Chr07:3546554..3546578 (25 bp)
GTGTTCACGTATACTAAGGGCAAGC
LOC_Os07g07170
OsAffx.16131.1.S1_at--840--9891Chr07:3546565..3546589 (25 bp)
TACTAAGGGCAAGCACACGGTGACG
LOC_Os07g07170
OsAffx.16131.1.S1_at--120--2631Chr07:3546620..3546644 (25 bp)
AACCGGCAGGGCAACACGTTGATGA
LOC_Os07g07170
OsAffx.16131.1.S1_at--76--1731Chr07:3546635..3546659 (25 bp)
ACGTTGATGACGTGGAACTCCGGCA
LOC_Os07g07170
OsAffx.16131.1.S1_at--725--1331Chr07:3546690..3546714 (25 bp)
AGAGGTGGTTCTTCTGCAACGTCGA
LOC_Os07g07170
OsAffx.16131.1.S1_at--402--2211Chr07:3546714..3546738 (25 bp)
ACAACCACTGCGAGCTGGGCATGAA
LOC_Os07g07170
Target Sequence 
CGGCGATGGTCTCTGCCACGGATTACACCGTCGGCGATGGCCATGGCTGGACTCTCGAGTACCCTTCCACCAACTGGGCC
GACGGCAAATCATTCCAAATCGGCGACAAACTAGTGTTCACGTATACTAAGGGCAAGCACACGGTGACGGAGGTGGACGG
CGCAGCGTTCCACGCGTGCAACCGGCAGGGCAACACGTTGATGACGTGGAACTCCGGCAACGACACGGTGGCGCTCGACA
AGGCCGGCAAGAGGTGGTTCTTCTGCAACGTCGACAACCACTGCGAGCTGGGCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis