Browse Element(s) Details


OsAffx.16134.1.S1_at

Description tigr:9635.m00686
TID=OsAffx.16134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0740011/11AN1-like Zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07350Os.51482.1.S1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07350Os.6805.1.A1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16134.1.S1_at--364--7631Chr07:3697244..3697268 (25 bp)
GGGACAGTGACAAAACATCGCTGAA
LOC_Os07g07400
OsAffx.16134.1.S1_at--904--2411Chr07:3697233..3697257 (25 bp)
AAAACATCGCTGAAGGTCGTCGCCG
LOC_Os07g07400
OsAffx.16134.1.S1_at--962--7231Chr07:3697215..3697239 (25 bp)
GTCGCCGACCTATCAACGCTCGTGA
LOC_Os07g07400
OsAffx.16134.1.S1_at--47--5851Chr07:3697209..3697233 (25 bp)
GACCTATCAACGCTCGTGATCAAGG
LOC_Os07g07400
OsAffx.16134.1.S1_at--273--1832Chr07:3697200..3697224 (25 bp)
ACGCTCGTGATCAAGGACAACTCCG
LOC_Os07g07400
OsAffx.16134.1.S1_at--720--3972Chr07:3697195..3697219 (25 bp)
CGTGATCAAGGACAACTCCGGCGTC
LOC_Os07g07400
OsAffx.16134.1.S1_at--778--8931Chr07:3697130..3697154 (25 bp)
TGACGAAGGCGAAGAACCGGTGCAA
LOC_Os07g07400
OsAffx.16134.1.S1_at--1031--1032Chr07:3697091..3697115 (25 bp)
AGGTGGGTCTGCTGGGCTTCCCGTG
LOC_Os07g07400
OsAffx.16134.1.S1_at--448--1831Chr07:3697037..3697061 (25 bp)
ACGCGTGCGCGTTCGACTACAAGGC
LOC_Os07g07400
OsAffx.16134.1.S1_at--1113--9151Chr07:3697032..3697056 (25 bp)
TGCGCGTTCGACTACAAGGCGGCCG
LOC_Os07g07400
OsAffx.16134.1.S1_at--1001--4511Chr07:3697007..3697031 (25 bp)
GCCGCGAAGCCATTGCGCGCCATAA
LOC_Os07g07400
Target Sequence 
GGGACAGTGACAAAACATCGCTGAAGGTCGTCGCCGACCTATCAACGCTCGTGATCAAGGACAACTCCGGCGTCGGAGGC
GAGGGGACGACGGTGATGGCGCCGCCGGCGACGGTGACGAAGGCGAAGAACCGGTGCAAGGCGTGCCGGAAGAAGGTGGG
TCTGCTGGGCTTCCCGTGCCGGTGCGGCGGCATGTTCTGCGGCGCGCACGCGTGCGCGTTCGACTACAAGGCGGCCGGCC
GCGAAGCCATTGCGCGCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis