Browse Element(s) Details


OsAffx.16158.1.A1_at

Description tigr:9635.m00806
TID=OsAffx.16158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g085503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08500OsAffx.28967.1.S1_x_at11/117+4387927..4390224expressed protein
LOC_Os07g08500OsAffx.28967.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08500Os.57401.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08510OsAffx.16158.1.S1_at11/117+4394588..4395985hypothetical protein
LOC_Os07g08520OsAffx.28346.1.S1_at11/117+4398790..4401436B3 DNA binding domain containing protein
LOC_Os07g08530Os.52071.1.S1_at11/117+4402012..4403784B3 DNA binding domain containing protein, expressed
LOC_Os07g08540OsAffx.28347.1.S1_at11/117+4405006..4407956B3 DNA binding domain containing protein
LOC_Os07g08550OsAffx.16158.1.A1_at3/117+4409622..4410065hypothetical protein
LOC_Os07g08560OsAffx.19542.3.S1_x_at5/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08560OsAffx.9949.1.S1_at1/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08570OsAffx.16159.1.S1_at11/117+4423918..4425092F-box domain containing protein
LOC_Os07g08579NANA7+4426161..4426811NA
LOC_Os07g08590OsAffx.28348.1.S1_at11/117+4428485..4428922hypothetical protein
LOC_Os07g08600OsAffx.28349.1.S1_at11/117+4430893..4432730B3 DNA binding domain containing protein
LOC_Os07g08610Os.51418.1.S1_at5/117+4433036..4435337retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16158.1.A1_at--505--3331Chr07:4395161..4395185 (25 bp)
CACGAATGCGCGCCTTCTCGGACGG
NONE
OsAffx.16158.1.A1_at--725--7111Chr07:4395135..4395159 (25 bp)
GTCAGACGCAGGAGGAAGCGCTCCT
NONE
OsAffx.16158.1.A1_at--261--951Chr07:4395123..4395147 (25 bp)
AGGAAGCGCTCCTCGGGCGCGGTGA
NONE
OsAffx.16158.1.A1_at--613--5833Chr07:4395100..4395124 (25 bp)
GACCTGGATCTCGAAGAGGGAGAAC
NONE
OsAffx.16158.1.A1_at--986--453Chr07:4456505..4456529 (25 bp)
ATCTCGAAGAGGGAGAACTCGTCGG
NONE
OsAffx.16158.1.A1_at--71--8931Chr07:4394978..4395002 (25 bp)
TGACCATGACGAGCCAGCCACGGGT
NONE
OsAffx.16158.1.A1_at--742--4331Chr07:4394975..4394999 (25 bp)
CCATGACGAGCCAGCCACGGGTGCT
NONE
OsAffx.16158.1.A1_at--731--2591Chr07:4394919..4394943 (25 bp)
AACGCGATGTCATGGCGGCGCCCGT
NONE
OsAffx.16158.1.A1_at--982--8371Chr07:4394809..4394833 (25 bp)
GGCGATCACCATGGGCCCGTCGCAG
NONE
OsAffx.16158.1.A1_at--721--7632Chr07:4394784..4394808 (25 bp)
GGGAGCTCGAGCCATGGCTTGGAGA
NONE
OsAffx.16158.1.A1_at--291--913Chr07:4456136..4456160 (25 bp)
AGGCGGCGGAAGACGTTGCGCAGGA
NONE
Target Sequence 
CACGAATGCGCGCCTTCTCGGACGGCGTCAGACGCAGGAGGAAGCGCTCCTCGGGCGCGGTGACCTGGATCTCGAAGAGG
GAGAACTCGTCGGGGAGGCGGAACTCGAGGTGCGGGAGCAGCGGGTGGACGACGTGGATGGTGGCGGTGCCGGCGGCGCC
GGCGACTCCCTCGGGGCCCTTCCTGACCATGACGAGCCAGCCACGGGTGCTCCCGACGCAGCGCGCGCCGCGGGCGTGGG
GGAACGCGATGTCATGGCGGCGCCCGTCGGCGAGGCTGAGGAAGGCGCGGGAGGCCGGGTCGAGCGCCATCCCCTCCGGG
AGCAGCAGCGCCGGCATGAGCCGCTGCGGCTCGGCGATCACCATGGGCCCGTCGCAGGGGAGCTCGAGCCATGGCTTGGA
GAGGAAGGTGGCGCCGTCGAAGTCCGGGTTGCGGGGGAGGCGGCGGAAGACGTTGCGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16158.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis