Browse Element(s) Details


OsAffx.16160.1.S1_at

Description tigr:9635.m00823
TID=OsAffx.16160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0868011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08630NANA7+4444177..4447943retrotransposon protein, putative, unclassified
LOC_Os07g08640Os.56343.1.S1_at3/117+4451901..4452899retrotransposon protein, putative, unclassified
LOC_Os07g08650Os.54836.1.S1_at11/117+4455911..4457525expressed protein
LOC_Os07g08660Os.4726.1.S1_at11/117+4458855..446093040S ribosomal protein S15, putative, expressed
LOC_Os07g08670NANA7+4465720..4466277expressed protein
LOC_Os07g08680OsAffx.16160.1.S1_at11/117+4469620..4471386expressed protein
LOC_Os07g08690OsAffx.28350.1.S1_at11/117+4472479..4472793hypothetical protein
LOC_Os07g08700Os.53211.1.S1_at1/117+4475947..4476318hypothetical protein
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16160.1.S1_at--511--851Chr07:4469655..4469679 (25 bp)
ATGGCAGCTATTCTCCGATCCCTGG
LOC_Os07g08680
OsAffx.16160.1.S1_at--864--10451Chr07:4469728..4469752 (25 bp)
TTAGCGAGGCAGCTTCAGATCATCA
LOC_Os07g08680
OsAffx.16160.1.S1_at--274--2891Chr07:4470923..4470947 (25 bp)
AAGGGATCTGCTTCGGCGATGATGC
LOC_Os07g08680
OsAffx.16160.1.S1_at--456--4911Chr07:4470932..4470956 (25 bp)
GCTTCGGCGATGATGCAGCAGGAAA
LOC_Os07g08680
OsAffx.16160.1.S1_at--639--6031Chr07:4470993..4471017 (25 bp)
GAGATGATCTTGCTCCTAGTCCTCG
LOC_Os07g08680
OsAffx.16160.1.S1_at--1096--3071Chr07:4471178..4471202 (25 bp)
AATAATCCGTTTATCCATCATCACC
LOC_Os07g08680
OsAffx.16160.1.S1_at--935--9591Chr07:4471195..4471219 (25 bp)
TCATCACCTACGCAAGCTTCAAACT
LOC_Os07g08680
OsAffx.16160.1.S1_at--652--2391Chr07:4471215..4471239 (25 bp)
AAACTTGGACAAAACTCTGCTAGAA
LOC_Os07g08680
OsAffx.16160.1.S1_at--310--3231Chr07:4471247..4471271 (25 bp)
CAAGAGAACCAAGGCAGAGCTTCCA
LOC_Os07g08680
OsAffx.16160.1.S1_at--782--6651Chr07:4471284..4471308 (25 bp)
GTTGACAGCACAACTGCGTAGCTCT
LOC_Os07g08680
OsAffx.16160.1.S1_at--561--11Chr07:4471331..4471355 (25 bp)
CTTGCCTTGAGCTGCCCCTTTAATT
LOC_Os07g08680
Target Sequence 
ATGGCAGCTATTCTCCGATCCCTGGGTCGCTCGGCAACCACCGCCGGCCTCTTCGGCCGCCGCTGCCGCCTCCTTAGCGA
GGCAGCTTCAGATCATCAGATCGCAAAGAACAGCGGCCACATGAAGAAGGGATCTGCTTCGGCGATGATGCAGCAGGAAA
GGGATGCTGCGGAATCGGGGGTGCAAAGCATTGGGGGAGATGATCTTGCTCCTAGTCCTCGCTTGCTTTTCTGGGGTAGA
ATAATCCGTTTATCCATCATCACCTACGCAAGCTTCAAACTTGGACAAAACTCTGCTAGAAACGCATACAAGAGAACCAA
GGCAGAGCTTCCATGCTTAGAAGCTGTTGACAGCACAACTGCGTAGCTCTCCCTCCATCTTTTCATACCCACCTTGCCTT
GAGCTGCCCCTTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis