Browse Element(s) Details


OsAffx.16208.1.S1_at

Description tigr:9635.m01083
TID=OsAffx.16208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1110011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11060Os.35753.1.S1_a_at11/117+6106359..6113781expressed protein
LOC_Os07g11070Os.44419.1.S1_at11/117+6116162..6119949bZIP protein, putative, expressed
LOC_Os07g11080OsAffx.8864.1.S1_at8/117+6123094..6126197retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11090Os.46273.1.S1_at3/117+6126567..6127886retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11100OsAffx.16208.1.S1_at11/117+6131217..6131664hypothetical protein
LOC_Os07g11100OsAffx.20978.1.S1_at5/117+6131217..6131664hypothetical protein
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed
LOC_Os07g11130OsAffx.1477.1.S1_at11/117+6144464..6144910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11150Os.44418.2.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11150Os.44418.1.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11160OsAffx.20490.1.S1_at6/117+6153663..6157210transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16208.1.S1_at--1161--10751Chr07:6131476..6131532 (25 bp)
TTGATGATAAGGACGATGGCAACGG
LOC_Os07g11100
OsAffx.16208.1.S1_at--102--911Chr07:6131451..6131475 (25 bp)
AGGCTCTTGACGGAGGCGTCCTAGA
LOC_Os07g11100
OsAffx.16208.1.S1_at--78--5731Chr07:6131443..6131467 (25 bp)
GACGGAGGCGTCCTAGAGGTGGCAA
LOC_Os07g11100
OsAffx.16208.1.S1_at--957--1331Chr07:6131307..6131453 (25 bp)
AGAGGTGGCAACTGTCACGAACTAT
LOC_Os07g11100
OsAffx.16208.1.S1_at--1086--7711Chr07:6131304..6131450 (25 bp)
GGTGGCAACTGTCACGAACTATGGT
LOC_Os07g11100
OsAffx.16208.1.S1_at--443--5151Chr07:6131300..6131446 (25 bp)
GCAACTGTCACGAACTATGGTGAGT
LOC_Os07g11100
OsAffx.16208.1.S1_at--344--10111Chr07:6131285..6131309 (25 bp)
TATGGTGAGTTCAATAGTCTGCGGA
LOC_Os07g11100
OsAffx.16208.1.S1_at--981--7751Chr07:6131282..6131306 (25 bp)
GGTGAGTTCAATAGTCTGCGGAAGA
LOC_Os07g11100
OsAffx.16208.1.S1_at--1002--6751Chr07:6131277..6131301 (25 bp)
GTTCAATAGTCTGCGGAAGACGGTG
LOC_Os07g11100
OsAffx.16208.1.S1_at--698--1891Chr07:6131258..6131282 (25 bp)
ACGGTGGTAGGGTGGCAAGCGGCTT
LOC_Os07g11100
OsAffx.16208.1.S1_at--384--7511Chr07:6131247..6131271 (25 bp)
GTGGCAAGCGGCTTCCCGGTGCTCT
LOC_Os07g11100
Target Sequence 
TTGATGATAAGGACGATGGCAACGGAGGCTCTTGACGGAGGCGTCCTAGAGGTGGCAACTGTCACGAACTATGGTGAGTT
CAATAGTCTGCGGAAGACGGTGGTAGGGTGGCAAGCGGCTTCCCGGTGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis