Browse Element(s) Details


OsAffx.16229.1.S1_x_at

Description tigr:9635.m01239
TID=OsAffx.16229.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g126007/11F-box domain containing protein, expressed
LOC_Os07g125901/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12600Os.52957.1.S1_at11/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12600OsAffx.16229.1.S1_x_at7/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12610Os.50765.1.S1_at11/117+7204847..7207841F-box domain containing protein, expressed
LOC_Os07g12620OsAffx.5303.1.S1_at2/117+7212956..7213675hypothetical protein
LOC_Os07g12630Os.49557.1.S1_at11/117+7222897..7226547transcription elongation factor S-II family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16229.1.S1_x_at--482--271Chr07:7198265..7198289 (25 bp)
ATATGTCCTGTGAGCTCCTGGTGCA
LOC_Os07g12600
OsAffx.16229.1.S1_x_at--634--8971Chr07:7198235..7198259 (25 bp)
TGAAAAAGCTCCCTGCCGTTGAAAT
LOC_Os07g12600
OsAffx.16229.1.S1_x_at--1056--5571Chr07:7198215..7198239 (25 bp)
GAAATCCTATCTCTGCGGTTATTAA
LOC_Os07g12600
OsAffx.16229.1.S1_x_at--127--10091Chr07:7198187..7198211 (25 bp)
TAGGACATACCTTTGGACCTTGTGT
LOC_Os07g12600
OsAffx.16229.1.S1_x_at--170--8091Chr07:7198173..7198197 (25 bp)
GGACCTTGTGTTTACCATTTGCTTA
LOC_Os07g12600
OsAffx.16229.1.S1_x_at--1109--6351Chr07:7197280..7197304 (25 bp)
GATCCTTTGGTTACTGTCAGCGAGA
LOC_Os07g12600
OsAffx.16229.1.S1_x_at--349--3712Chr07:7197228..7197252 (25 bp)
CTACCCCAGGGATTTGCATGGAAAT
LOC_Os07g12600
OsAffx.16229.1.S1_x_at--1043--5131NONE
GCAATGGAACTAGGCCTGGTGACCC
NONE
OsAffx.16229.1.S1_x_at--724--4311Chr07:7196450..7196474 (25 bp)
CCTTCAATTCTCCTATACGCTGAAT
NONE
OsAffx.16229.1.S1_x_at--1053--6251Chr07:7196420..7196444 (25 bp)
GTTAACTTGTTACAGAGTTCCTTCT
NONE
OsAffx.16229.1.S1_x_at--99--1331Chr07:7196407..7196431 (25 bp)
AGAGTTCCTTCTTGGTTGTCCCATG
NONE
Target Sequence 
ATATGTCCTGTGAGCTCCTGGTGCAAGCAGTGAAAAAGCTCCCTGCCGTTGAAATCCTATCTCTGCGGTTATTAACAATA
GGACATACCTTTGGACCTTGTGTTTACCATTTGCTTAAGATGTCTACTGGTATAAGGGAGCTGAAGCTGAAGTTAGAAGA
TCACATTGCGGATGGAGAAGTTCCTTGCTCATCTGGCTGCGTTTGTTACGAGCCCCAGGCCTGGAAAAAGAATAATATCA
GCTTGAATTTTCTCCAGAAAGTTGAAATCAACAATTTGAGTGGAGCAGAGCGTCAAATATATTTTGTCAAACGACTGTTG
AGATGGACGATGCCAGAGCTCAAGACGATTACTCTAAGTTTTGATCCTTTGGTTACTGTCAGCGAGAAGGTGTCTAGGAA
GCTACTTAGCTTCTCTACCCCAGGGATTTGCATGGAAATTTACTTGCACCGCAATGGAACTAGGCCTGGTGACCCGCCTT
CAATTCTCCTATACGCTGAATTTATTGTTAACTTGTTACAGAGTTCCTTCTTGGTTGTCCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16229.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis