Browse Element(s) Details


OsAffx.16247.1.S1_at

Description tigr:9635.m01363
TID=OsAffx.16247.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1380011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13740NANA7+7882736..7883746hypothetical protein
LOC_Os07g13750OsAffx.16111.1.S1_at1/117+7884765..7891981retrotransposon protein, putative, unclassified
LOC_Os07g13750OsAffx.11259.1.S1_at1/117+7884765..7891981retrotransposon protein, putative, unclassified
LOC_Os07g13750OsAffx.22699.1.S1_x_at1/117+7884765..7891981retrotransposon protein, putative, unclassified
LOC_Os07g13760NANA7+7892947..7895506hypothetical protein
LOC_Os07g13770Os.14631.1.S1_at11/117+7898877..7900719UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13780NANA7+7902088..7902684Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13790OsAffx.5320.1.S1_at10/117+7902982..7904224hypothetical protein
LOC_Os07g13800OsAffx.16247.1.S1_at11/117+7905788..7907712UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810Os.36218.2.S1_x_at11/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810Os.36218.1.S1_at10/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810OsAffx.5324.1.S1_x_at2/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13830Os.31430.1.S1_at11/117+7917666..7919483expressed protein
LOC_Os07g13840OsAffx.28433.1.S1_s_at11/117+7923924..7924856hypothetical protein
LOC_Os07g13840OsAffx.9066.1.S1_x_at1/117+7923924..7924856hypothetical protein
LOC_Os07g13850OsAffx.25936.7.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.5.S1_x_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.2.S1_x_at5/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_at1/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.10827.1.S1_x_at4/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.46055.2.S1_x_at3/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16247.1.S1_at--1049--8511Chr07:7907129..7907153 (25 bp)
TGGACACGAAGGAGCCCGGATCCGT
LOC_Os07g13800
OsAffx.16247.1.S1_at--799--4191Chr07:7907143..7907167 (25 bp)
CCCGGATCCGTGCTATATGTGAGTT
LOC_Os07g13800
OsAffx.16247.1.S1_at--1044--10211Chr07:7907220..7907244 (25 bp)
TTTGGCAAACAGTGGAAGGCCTTTC
LOC_Os07g13800
OsAffx.16247.1.S1_at--84--5271Chr07:7907234..7907258 (25 bp)
GAAGGCCTTTCCTATGGGTGGTTCG
LOC_Os07g13800
OsAffx.16247.1.S1_at--402--10611Chr07:7907255..7907279 (25 bp)
TTCGTCCTGGTCTCGTTATCGGTGT
LOC_Os07g13800
OsAffx.16247.1.S1_at--477--2871Chr07:7907336..7907360 (25 bp)
AAGTGGTCGATTGGGCACCGCAGAC
LOC_Os07g13800
OsAffx.16247.1.S1_at--252--5051Chr07:7907355..7907379 (25 bp)
GCAGACGGAGGTGCTAGCTCACCAT
LOC_Os07g13800
OsAffx.16247.1.S1_at--1139--7691Chr07:7907441..7907465 (25 bp)
GGGTCCCGATGTTGTCAAGGCCTAT
LOC_Os07g13800
OsAffx.16247.1.S1_at--418--10791Chr07:7907452..7907476 (25 bp)
TTGTCAAGGCCTATCTTTGGAGATC
LOC_Os07g13800
OsAffx.16247.1.S1_at--359--6031Chr07:7907471..7907495 (25 bp)
GAGATCAACTGGTTACTGCGAGGTA
LOC_Os07g13800
OsAffx.16247.1.S1_at--966--831Chr07:7907654..7907678 (25 bp)
ATGGAGGTTCTACTCAGCAAGCTAT
LOC_Os07g13800
Target Sequence 
TGGACACGAAGGAGCCCGGATCCGTGCTATATGTGAGTTTTGGGAGTGTGGTCATGGTGAGCCAGGATGAGTTCAACGAG
GTAGCCTGGGGTTTGGCAAACAGTGGAAGGCCTTTCCTATGGGTGGTTCGTCCTGGTCTCGTTATCGGTGTCTCGGGGAA
ACCGGAGCTACCGGAAGGGTTTGTGGAAGCGGTGGAGGGTAGGTGCAAAGTGGTCGATTGGGCACCGCAGACGGAGGTGC
TAGCTCACCATGCGGTGGGTGGGTTTTGGACGCACAATGGTTGGAACTCGACGTTAGAGAGTATTTACGAAGGGGTCCCG
ATGTTGTCAAGGCCTATCTTTGGAGATCAACTGGTTACTGCGAGGTACGTGCAGGAGACGTGGCAGATAGGTTTTCGGGT
GGAGGGTAAGCTAGAGAGATGGAAAATTGAGGAGGCCATTAGGAGGTTGATGGAAGGTGAGGAGGGGGCTGAGGTTAAGC
AGAGGGCAGATGAACTTAAGAAGAAAATATTGATATGCTTGAAGAATGGAGGTTCTACTCAGCAAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis