Browse Element(s) Details


OsAffx.16286.1.S1_at

Description tigr:9635.m01582
TID=OsAffx.16286.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1587011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15830OsAffx.31892.3.S1_at10/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.31892.1.S1_x_at4/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.4864.1.S1_at1/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15840OsAffx.8326.1.S1_x_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15840OsAffx.19950.1.S1_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15850OsAffx.4856.1.S1_x_at1/117+9204802..9210438retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g15860OsAffx.28468.1.S1_at2/117+9213420..9214479hypothetical protein
LOC_Os07g15870OsAffx.16286.1.S1_at11/117+9216446..9217637hypothetical protein
LOC_Os07g15880Os.9227.1.S1_a_at11/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15880OsAffx.3846.1.S1_at1/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15890Os.41248.4.S1_x_at1/117+9228610..9233991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15900NANA7+9239530..9241129hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16286.1.S1_at--140--4471Chr07:9217100..9217124 (25 bp)
GCCTCTCCTAGGTATCATCGTGAAA
LOC_Os07g15870
OsAffx.16286.1.S1_at--826--5851Chr07:9217128..9217152 (25 bp)
GACCAAGAACACTATACTCCCACGT
LOC_Os07g15870
OsAffx.16286.1.S1_at--1054--7711Chr07:9217182..9217206 (25 bp)
GGTGGAAACCCTAGACGCAGCCGCC
LOC_Os07g15870
OsAffx.16286.1.S1_at--342--1671Chr07:9217200..9217224 (25 bp)
AGCCGCCAGAGCAAGTGGCCACCAA
LOC_Os07g15870
OsAffx.16286.1.S1_at--1127--7511Chr07:9217214..9217238 (25 bp)
GTGGCCACCAAAGCCGGCGACTTGT
LOC_Os07g15870
OsAffx.16286.1.S1_at--47--2151Chr07:9217258..9217282 (25 bp)
ACAGATCCGGCGTGGCAGACTCAAA
LOC_Os07g15870
OsAffx.16286.1.S1_at--53--4271Chr07:9217264..9217288 (25 bp)
CCGGCGTGGCAGACTCAAAGGTTGA
LOC_Os07g15870
OsAffx.16286.1.S1_at--508--5831Chr07:9217447..9217471 (25 bp)
GACCGGATCCACGATGGACATCGCT
LOC_Os07g15870
OsAffx.16286.1.S1_at--485--8131Chr07:9217462..9217486 (25 bp)
GGACATCGCTGTATCTAGAGCCGAG
LOC_Os07g15870
OsAffx.16286.1.S1_at--510--1631Chr07:9217562..9217586 (25 bp)
AGCGGCAGCAGTGGGCGCCAAATCT
LOC_Os07g15870
OsAffx.16286.1.S1_at--601--7531Chr07:9217574..9217598 (25 bp)
GGGCGCCAAATCTGGTACCCTCTGG
LOC_Os07g15870
Target Sequence 
GCCTCTCCTAGGTATCATCGTGAAAATAGACCAAGAACACTATACTCCCACGTCCGCGTCACTGCCCGCGTCGGGCGACT
CGGGTGGAAACCCTAGACGCAGCCGCCAGAGCAAGTGGCCACCAAAGCCGGCGACTTGTGAGGTTGGCGGCGGCCTCCAC
AGATCCGGCGTGGCAGACTCAAAGGTTGAGGATGGCCGGAGGGATGCCGGCGTTGAGGTTGGCATGCAGGAAAAGGTGGT
GCAAGCGTGGTCGGGCCGGCGGTGGCGGGGTACGGGAGGCAGAGTACAAAGGTGGGGCACGGGAGGCGACAACGGCGGCG
ACGGAGAGCCACCCACGCGCCAAACCCGACCGGATCCACGATGGACATCGCTGTATCTAGAGCCGAGCGGAGGTGGTGAT
AGGCGGCGGGGCAGCGATGTCATGCGGTGGGATTGCAGTGACGGCGGCAATGTCGAGGCGGTAGCGGCAGCAGTGGGCGC
CAAATCTGGTACCCTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis