Browse Element(s) Details


OsAffx.16289.1.S1_at

Description tigr:9635.m01606
TID=OsAffx.16289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1610011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16040Os.26453.1.S1_s_at11/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16040Os.26453.2.S1_x_at11/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16040Os.26453.1.S1_at9/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16054NANA7+9357880..9360614hypothetical protein
LOC_Os07g16070OsAffx.5345.1.S1_at11/117+9367436..9370474hypothetical protein
LOC_Os07g16070OsAffx.31070.1.S1_x_at1/117+9367436..9370474hypothetical protein
LOC_Os07g16080NANA7+9371282..9371701retrotransposon protein, putative, unclassified
LOC_Os07g16090Os.40855.5.S1_x_at11/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_at9/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_x_at8/117+9375387..9378722hypothetical protein
LOC_Os07g16090OsAffx.15821.2.S1_at4/117+9375387..9378722hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_x_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16110OsAffx.17914.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.2606.1.S1_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.1436.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16120OsAffx.20387.1.S1_x_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.4941.1.S1_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.29419.3.S1_at1/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16130Os.52325.1.S1_at11/117+9393670..9395830acetyltransferase, GNAT family protein, expressed
LOC_Os07g16140Os.27668.1.S1_at11/117+9397725..9402050expressed protein
LOC_Os07g16150Os.57294.1.S1_at10/117+9404144..9405448expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16289.1.S1_at--531--3951Chr07:9381804..9381828 (25 bp)
CGGAAACGCCAGTCAGCGGCATAAT
LOC_Os07g16100
OsAffx.16289.1.S1_at--1023--8151Chr07:9381803..9381827 (25 bp)
GGAAACGCCAGTCAGCGGCATAATA
LOC_Os07g16100
OsAffx.16289.1.S1_at--648--5551Chr07:9381802..9381826 (25 bp)
GAAACGCCAGTCAGCGGCATAATAG
LOC_Os07g16100
OsAffx.16289.1.S1_at--496--2351Chr07:9381801..9381825 (25 bp)
AAACGCCAGTCAGCGGCATAATAGG
LOC_Os07g16100
OsAffx.16289.1.S1_at--572--6257Chr10:5248021..5248042 (22 bp)
GATGGTGAAAGCGAAGACGCCCATC
NONE
OsAffx.16289.1.S1_at--613--817Chr10:5248021..5248043 (23 bp)
ATGGTGAAAGCGAAGACGCCCATCA
NONE
OsAffx.16289.1.S1_at--1144--85914Chr10:5248021..5248044 (24 bp)
TGGTGAAAGCGAAGACGCCCATCAA
NONE
OsAffx.16289.1.S1_at--1052--3911Chr07:9380531..9380555 (25 bp)
CGGCCATCGGTGAAGACCGATCCCG
LOC_Os07g16100
OsAffx.16289.1.S1_at--831--8431Chr07:9380530..9380554 (25 bp)
GGCCATCGGTGAAGACCGATCCCGG
LOC_Os07g16100
OsAffx.16289.1.S1_at--490--4331Chr07:9380528..9380552 (25 bp)
CCATCGGTGAAGACCGATCCCGGCG
LOC_Os07g16100
OsAffx.16289.1.S1_at--126--3551Chr07:9380527..9380551 (25 bp)
CATCGGTGAAGACCGATCCCGGCGA
LOC_Os07g16100
Target Sequence 
CGGAAACGCCAGTCAGCGGCATAATAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGTGGCGGACGAGGCGGCCGAGGTG
ACCAATGTGGGAACAAAGTCATCCATCAATAACAATGAAGACACCAGTCGGCGGCGACGAAGGCGGTCGATGGTGAAAGC
GAAGACGCCCATCAACGGCGGCATAATAGGCCAGCCGTGCAGGTGGAAACACCAGTCGGTGGCGGTGAAGGCAGCCGCGG
CCATCGGTGAAGACCGATCCCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis