Browse Element(s) Details


OsAffx.16295.1.S1_at

Description tigr:9635.m01637
TID=OsAffx.16295.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1638011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16350OsAffx.11409.1.S1_at1/117+9547542..9549103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16360OsAffx.31869.3.S1_x_at8/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.3.S1_at7/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.4.S1_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.1.S1_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.4.S1_x_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.5.S1_x_at3/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360Os.48015.1.A1_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.21269.1.S1_x_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360Os.48015.1.A1_x_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16370Os.50833.1.S2_at11/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16370Os.50833.1.S1_at11/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16370OsAffx.11394.1.S1_at1/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16380OsAffx.16295.1.S1_at11/117+9572447..9572866hypothetical protein
LOC_Os07g16389NANA7+9583718..9584079NA
LOC_Os07g16400Os.45173.1.S1_x_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400Os.46610.1.A1_x_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400Os.38751.1.A1_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400OsAffx.28492.1.S1_at1/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400OsAffx.20877.1.S1_at1/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16295.1.S1_at--754--5851Chr07:9572498..9572522 (25 bp)
GACCAGCTCCGCTTTGTTGCTGCCG
LOC_Os07g16380
OsAffx.16295.1.S1_at--43--3951Chr07:9572599..9572623 (25 bp)
CGGCACCATCAGCAGTGATGACAAC
LOC_Os07g16380
OsAffx.16295.1.S1_at--89--3471Chr07:9572611..9572635 (25 bp)
CAGTGATGACAACGTGTGGAGCTTC
LOC_Os07g16380
OsAffx.16295.1.S1_at--965--5611Chr07:9572618..9572642 (25 bp)
GACAACGTGTGGAGCTTCGTGCAAT
LOC_Os07g16380
OsAffx.16295.1.S1_at--120--5931Chr07:9572629..9572653 (25 bp)
GAGCTTCGTGCAATTGACGGCGCTA
LOC_Os07g16380
OsAffx.16295.1.S1_at--639--10611Chr07:9572633..9572657 (25 bp)
TTCGTGCAATTGACGGCGCTACCGC
LOC_Os07g16380
OsAffx.16295.1.S1_at--683--7391Chr07:9572672..9572696 (25 bp)
GTGTTCCCGTCCCACATAGCGACGG
LOC_Os07g16380
OsAffx.16295.1.S1_at--113--1651Chr07:9572689..9572713 (25 bp)
AGCGACGGGCGCATCCAGAACCTGG
LOC_Os07g16380
OsAffx.16295.1.S1_at--740--5071Chr07:9572784..9572808 (25 bp)
GCAGCGTCGTCCACGCATGGGAAAA
LOC_Os07g16380
OsAffx.16295.1.S1_at--734--4651Chr07:9572787..9572811 (25 bp)
GCGTCGTCCACGCATGGGAAAATGC
LOC_Os07g16380
OsAffx.16295.1.S1_at--3--2451Chr07:9572805..9572829 (25 bp)
AAAATGCGAAGTGGCGCCACGGAGA
LOC_Os07g16380
Target Sequence 
GACCAGCTCCGCTTTGTTGCTGCCGCCGCCGACGCCTCGGTAGCCGACGGCCTCGCCTACAACTCCACCGTCACCACGAG
GCTGCTCGCCCGTGCCAACGGCGGCACCATCAGCAGTGATGACAACGTGTGGAGCTTCGTGCAATTGACGGCGCTACCGC
CACCATCGGCCCCTGTGTTCCCGTCCCACATAGCGACGGGCGCATCCAGAACCTGGGCCCCGGCCGCCACTGCCTTCGAT
CTCCGCGATGGCGTCGTCGACGGCAACGCTGAGTGGAGCGACGGCGGCAGCGTCGTCCACGCATGGGAAAATGCGAAGTG
GCGCCACGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis