Browse Element(s) Details


OsAffx.16307.1.S1_at

Description tigr:9635.m01732
TID=OsAffx.16307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1723011/11B3 DNA binding domain containing protein, expressed
LOC_Os01g171301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17210OsAffx.28487.1.S1_at11/117+10126641..10135779chromatin assembly factor-1, putative, expressed
LOC_Os07g17220Os.10506.1.S1_at11/117+10140594..10144188Leucine Rich Repeat family protein, expressed
LOC_Os07g17230OsAffx.16307.1.S1_at11/117+10153757..10158080B3 DNA binding domain containing protein, expressed
LOC_Os07g17240Os.35344.3.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240Os.35344.18.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.2.S1_s_at8/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.3.S1_x_at6/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.5.S1_x_at4/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.1.S1_s_at2/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17250Os.52237.1.S1_at11/117+10171462..10175056NB-ARC domain containing protein, expressed
LOC_Os07g17260Os.10226.1.A1_at11/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.45957.4.S1_x_at6/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.24327.1.A1_at1/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.49134.1.S1_at1/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16307.1.S1_at--809--2971Chr07:10154287..10154311 (25 bp)
AATGAGATCCCGTACCTTGGTGACC
LOC_Os07g17230
OsAffx.16307.1.S1_at--321--1751Chr07:10154265..10154289 (25 bp)
ACCTGCCATGTCTTAAATTTCTCTT
LOC_Os07g17230
OsAffx.16307.1.S1_at--18--8871Chr07:10154183..10154207 (25 bp)
TGATGGTAAACATGCCCCTGGATTC
LOC_Os07g17230
OsAffx.16307.1.S1_at--1108--7912Chr01:9845339..9845361 (23 bp)
GGATTCCCATCACTGGAGATACTGA
LOC_Os01g17130
OsAffx.16307.1.S1_at--1147--1511Chr07:10154079..10154103 (25 bp)
AGCTTCGAGGTCTCTCTATCAGTAG
LOC_Os07g17230
OsAffx.16307.1.S1_at--1133--2531Chr07:10154046..10154070 (25 bp)
AACTCAGTAATTTACCACCCCTGAT
LOC_Os07g17230
OsAffx.16307.1.S1_at--1085--8831Chr07:10153991..10154015 (25 bp)
TGATCAACTGCCAGCCTTGTCAGAA
LOC_Os07g17230
OsAffx.16307.1.S1_at--155--9651Chr07:10153972..10153996 (25 bp)
TCAGAATTTCCATCACTCAAGTCAC
LOC_Os07g17230
OsAffx.16307.1.S1_at--507--9491Chr07:10153908..10153932 (25 bp)
TCTGCCCTGAGATGCCATTGTTACA
LOC_Os07g17230
OsAffx.16307.1.S1_at--715--291Chr07:10153846..10153870 (25 bp)
ATAGATGCTCCTTTGTTGTCTGTTT
LOC_Os07g17230
OsAffx.16307.1.S1_at--246--8731Chr07:10153808..10153832 (25 bp)
TGTCAGGTGCCCAAAACTTCATTTT
LOC_Os07g17230
Target Sequence 
AATGAGATCCCGTACCTTGGTGACCTGCCATGTCTTAAATTTCTCTTCATACAGAAAATGTATGCTGTAGAAAACTTTGG
ACAAAGAAGTAACTCTTTGACTACTGATGGTAAACATGCCCCTGGATTCCCATCACTGGAGATACTGAATCTGTGGGAGA
TGTATTCTTTGCAATTCTGGAATGGAACAAGATATGGGGATTTCCCACAGCTTCGAGGTCTCTCTATCAGTAGATGCCCA
AAACTCAGTAATTTACCACCCCTGATTTCCCTGCTATATTTGTCATTTCACTGTGGTGATCAACTGCCAGCCTTGTCAGA
ATTTCCATCACTCAAGTCACTGAAGATTGAAGGCTTTCAGAAGCTCAAGTCTGTCAGCTTCTGCCCTGAGATGCCATTGT
TACAAAAATTGGAGATAAGTGATTGCAAAGAGTTAGTATCAATAGATGCTCCTTTGTTGTCTGTTTCAAATTTAAAAGTT
GTCAGGTGCCCAAAACTTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis