Browse Element(s) Details


OsAffx.16343.1.S1_at

Description tigr:9635.m02009
TID=OsAffx.16343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2039011/11hypothetical protein
LOC_Os01g310701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20360Os.10263.1.S1_at2/117+11743858..11749681Zinc knuckle family protein
LOC_Os07g20360OsAffx.27770.1.S1_x_at1/117+11743858..11749681Zinc knuckle family protein
LOC_Os07g20360Os.54691.1.S1_x_at1/117+11743858..11749681Zinc knuckle family protein
LOC_Os07g20370OsAffx.31892.3.S1_at2/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20370OsAffx.7216.1.S1_at1/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20370OsAffx.31892.1.S1_x_at1/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20380OsAffx.1194.1.S1_at1/117+11766637..11767122retrotransposon protein, putative, unclassified
LOC_Os07g20390OsAffx.16343.1.S1_at11/117+11769016..11770310hypothetical protein
LOC_Os07g20400OsAffx.16344.1.S1_at11/117+11772901..11773658hypothetical protein
LOC_Os07g20400OsAffx.23458.1.S1_x_at1/117+11772901..11773658hypothetical protein
LOC_Os07g20410OsAffx.16345.1.S1_s_at11/117+11783630..11784537expressed protein
LOC_Os07g20420OsAffx.16346.1.S1_at11/117+11787513..11790709phosphoglycerate/bisphosphoglycerate mutase family protein, putative
LOC_Os07g20430Os.14919.1.S1_at6/117+11792761..11801936retrotransposon protein, putative, unclassified
LOC_Os07g20430Os.56216.1.S1_at1/117+11792761..11801936retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16343.1.S1_at--171--1131Chr07:11770250..11770274 (25 bp)
AGTGCAGCTCCTGTGGTACATGCCA
LOC_Os07g20390
OsAffx.16343.1.S1_at--869--5431Chr07:11770197..11770221 (25 bp)
GAACCTCCAGCGTCATGTTGTGGAA
LOC_Os07g20390
OsAffx.16343.1.S1_at--645--6793Chr08:12793590..12794026 (25 bp)
GTTATCCTGCGTGGGACATCTCAAG
NONE
OsAffx.16343.1.S1_at--229--7031Chr07:11769692..11769716 (25 bp)
GTACATCTTCACGAACTATCTGGAT
LOC_Os07g20390
OsAffx.16343.1.S1_at--808--2651Chr07:11769640..11769664 (25 bp)
AAGCCACTTATGCAACAGCCTCAAG
LOC_Os07g20390
OsAffx.16343.1.S1_at--354--6911Chr07:11769256..11769316 (25 bp)
GTATGCTCAGGCTTGCATTTTCCGG
LOC_Os07g20390
OsAffx.16343.1.S1_at--1115--10271Chr07:11769238..11769262 (25 bp)
TTTCCGGTTGCCCATGAGGTTGAGA
LOC_Os07g20390
OsAffx.16343.1.S1_at--469--1235Chr12:11699413..11699437 (25 bp)
AGTTGTCGTACAGCCTCGGTGGAAC
NONE
OsAffx.16343.1.S1_at--656--1051Chr07:11769151..11769175 (25 bp)
AGGTGTACTCAGCTTATTGTGTCGG
LOC_Os07g20390
OsAffx.16343.1.S1_at--756--6392Chr08:12792323..12792347 (25 bp)
GATCGTCTCTTGAATATGCCCAAAA
NONE
OsAffx.16343.1.S1_at--157--1171Chr07:11769087..11769111 (25 bp)
AGTCATTTCTTCATAGCTACAGCAA
LOC_Os07g20390
Target Sequence 
AGTGCAGCTCCTGTGGTACATGCCACTGGCTGTCGCTGGCACTCTGCCAGGATGAACCTCCAGCGTCATGTTGTGGAACT
TGGGTCTAACCTGGGGCATCCGCAGTCGGGTCCCAACTGCCTTCATACATCTGCACTGGTGGTGAAGAGGAAGACGCCTC
TTGAGGTGCTCCTCTTGCCATTCGTCGCGTTATCCTGCGTGGGACATCTCAAGGCAACTCCACTTGGAGTGGAATGGACT
AGTACATCTTCACGAACTATCTGGATATCAGCTCTAAGAAACAGCATTAAACCAAGCCACTTATGCAACAGCCTCAAGAA
GGTCGAGTTGTATGCTCAGGCTTGCATTTTCCGGTTGCCCATGAGGTTGAGATCGGAGTTGTCGTACAGCCTCGGTGGAA
CGTACGCCTCCTCCATGGATTCATCCGCGGAAGAAGGTGTACTCAGCTTATTGTGTCGGCTTGTCCGTGAGCTTGATCGT
CTCTTGAATATGCCCAAAAGTCATTTCTTCATAGCTACAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis