Browse Element(s) Details


OsAffx.16345.1.S1_s_at

Description tigr:9635.m02011
TID=OsAffx.16345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20370OsAffx.31892.3.S1_at2/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20370OsAffx.7216.1.S1_at1/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20370OsAffx.31892.1.S1_x_at1/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20380OsAffx.1194.1.S1_at1/117+11766637..11767122retrotransposon protein, putative, unclassified
LOC_Os07g20390OsAffx.16343.1.S1_at11/117+11769016..11770310hypothetical protein
LOC_Os07g20400OsAffx.16344.1.S1_at11/117+11772901..11773658hypothetical protein
LOC_Os07g20400OsAffx.23458.1.S1_x_at1/117+11772901..11773658hypothetical protein
LOC_Os07g20410OsAffx.16345.1.S1_s_at11/117+11783630..11784537expressed protein
LOC_Os07g20420OsAffx.16346.1.S1_at11/117+11787513..11790709phosphoglycerate/bisphosphoglycerate mutase family protein, putative
LOC_Os07g20430Os.14919.1.S1_at6/117+11792761..11801936retrotransposon protein, putative, unclassified
LOC_Os07g20430Os.56216.1.S1_at1/117+11792761..11801936retrotransposon protein, putative, unclassified
LOC_Os07g20440NANA7+11803000..11806627retrotransposon protein, putative, unclassified
LOC_Os07g20450OsAffx.940.1.S1_x_at1/117+11808363..11809918retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16345.1.S1_s_at--213--5931Chr07:11783703..11783726 (24 bp)
GAGCACTGTCTTCTGGTGTTAACGC
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--846--4551Chr07:11783917..11783941 (25 bp)
GCGCCAACGTGGTTTGTGCTCAAGA
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--898--9571Chr07:11783948..11783972 (25 bp)
TCTTGCTACTGGCTTTCTGTTTTAC
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--1033--8771Chr07:11783965..11783989 (25 bp)
TGTTTTACTGCTATGCTTTCTCTAG
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--960--10391Chr07:11784029..11784053 (25 bp)
TTTTGCTTGTGACCATTGGCACGGT
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--999--3331Chr07:11784048..11784072 (25 bp)
CACGGTGCTATTTGTGCTTCTCAAC
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--584--7312Chr07:11784061..11784179 (25 bp)
GTGCTTCTCAACAGGTTTCTGGCAG
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--876--2651Chr07:11784264..11784288 (25 bp)
AAGCCTCTTGCTTTTATTGACATAG
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--789--8971Chr07:11784314..11784338 (25 bp)
TGAACAGTGTCCTTTTGTACAGACT
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--1024--10511Chr07:11784369..11784393 (25 bp)
TTCAGGCTGACACTAACACATTTTG
LOC_Os07g20410
OsAffx.16345.1.S1_s_at--413--5271Chr07:11784431..11784455 (25 bp)
GAATGCTTGTCATCCTCCTTTGATT
LOC_Os07g20410
Target Sequence 
GAGCACTGTCTTCTGGTGTTAACGCGCCAACGTGGTTTGTGCTCAAGATCACATTCTTGCTACTGGCTTTCTGTTTTACT
GCTATGCTTTCTCTAGCATTCTTTTCAAGTGACTTCATGATTATTGCACATGTTCTTTTGCTTGTGACCATTGGCACGGT
GCTATTTGTGCTTCTCAACAGGTTTCTGGCAGAAACTGGTCTGGTACCAGTTGAACAACAGATGAAGGAGATGGGTATTC
ATAAAATAGAAGCTACAGAGAAGGACAAGGGAAACTAAGCCTCTTGCTTTTATTGACATAGATGACAGCTCAAAATATTA
CATCATTGAACAGTGTCCTTTTGTACAGACTGTATATGCTCATTCAGGCATGGATGTAAATTTCAGGCTGACACTAACAC
ATTTTGATGAAGCTACATTTATCTAGGAATATACCACTTTTAGGAATGCTTGTCATCCTCCTTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16345.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis